Visualize intermolecular distances in Protein Data Bank (PDB) file
Any of the following:
Threshold distance in angstroms shown on a spy plot. Default is 7.
pdbdistplot displays the distances between atoms and amino acids in a PDB structure.
pdbdistplot(PDBid) retrieves information for the structure specified by PDBid from the Protein Data Bank (PDB) database. Creates a heat map showing interatom distances and a spy plot showing the residues where the minimum distances apart are less than 7 angstroms.
pdbdistplot(PDBid, Distance) specifies the threshold distance shown on a spy plot. Default is 7.
Display a heat map of the interatom distances and a spy plot at 7 angstroms of the protein cytochrome C from albacore tuna.
Display a spy plot at 10 angstroms of the same structure.