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how to mask region under the boundaries accurately ?

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Anand on 18 Aug 2014
Commented: Star Strider on 18 Aug 2014
I have an RGB image in which I have segmented certain portions of the image using bwboundaries commands in matlab. Now i want the region under the boundary to be masked with green color. For this i want develop algorithm dynamically
& not by using imfreehand command. could any one help on this? . I have attached the rgb image with boundaries marked...

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