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eye(3) - diag(ones(1,3))
11%
0 ./ ones(3)
9%
cos(repmat(pi/2, [3,3]))
16%
zeros(3)
20%
A(3, 3) = 0
32%
mtimes([1;1;0], [0,0,0])
12%
3009 votes
Hi All,
I'm trying to plot my observables in the analyzer and running into far more problems than expected. I have two species in my model that are invovled, blood.Insulin (pM) and blood.Glucose (mM), all I want to do is plot the ratio of these two (blood.Insulin/blood.Glucose (dimensionless)) along with my other species in Model Simulation, to compare it to the same ratio from my data.
First, there doesn't seem to be a way to directly add an observable to the logged states in 'Simulate Model', so I've tried to used 'Calculate Observable' based on the data from my last run (IVGTT.LastRun.results) but it says that units are required when unit conversion is enabled, but it should be dimensionless!
My next idea would be to make a non-constant parameter with a repeated assignment, but I feel like I should be able to do this without resorting to that?
Any help or ideas would be appreciated. Thank you, best regards,
Dan
I based my model construction on this PBPK model: PBPK by Armin Sepp. While this is a very convenient script for building a PBPK two-pore model, it's very incovenient for my application to have the species Units defined in molarity. Is there a convenient way to organically switch this model from molarity to grams (or any weight unit)?
We are excited to unveil the ‘Open in MATLAB Online from File Exchange’ feature, which offers MATLAB users a new way to open File Exchange content!
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Hi! I'm new to pk modeling and Matlab. Can someone guide me through how to conduct population pk modeling based on pk parameters from non-human primate studies? Much thanks!!!!
American style football
12%
Soccer / football
39%
baseball
5%
basketball
12%
tennis or golf
7%
rugby, track, cricket, racing, etc.
26%
3712 votes
You reached this milestone by providing valuable contribution to the community since you started answering questions in Since September 2018.
You provided 3984 answers and received 1142 votes. You are ranked #24 in the community. Thank you for your contribution to the community and please keep up the good track record!
MATLAB Central Team
The MATLAB AI Chat Playground is now open to the whole community! Answer questions, write first draft MATLAB code, and generate examples of common functions with natural language.
The playground features a chat panel next to a lightweight MATLAB code editor. Use the chat panel to enter natural language prompts to return explanations and code. You can keep chatting with the AI to refine the results or make changes to the output.
Give it a try, provide feedback on the output, and check back often as we make improvements to the model and overall experience.
What amazing animations can be created with no more than 2000 characters of MATLAB code? Check out our GALLERY from the MATLAB Flipbook Mini Hack contest.
Vote on your favorite animations before Dec. 3rd. We will give out MATLAB T-shirts to 10 lucky voters!
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The title is resonably non-descript, but I can explain it easily:
Say I have an initial Emax model:
v = emax1*[G]^n1/(ec501^n1+[G]^n1)
And I want to place v inside of a second Emax model:
y = emax2*v^n2/(ex502^n2+v^n2)
Currently, I have the full function of v inside y, twice, it's very long and whilst I only need to get it correct once, for readability in the future I'd rather have it in form #2. I've played around with non-constant parameters but I need the steady state to be v, not the rate rule, and I haven't worked out how to make a parameter shift to a form like v, as an observation might.
Are there any recommended solutions or do I simply need to keep with having v fully expressed in y?
Thank you,
Dan
You are invited to join our 2023 community contest – MATLAB Flipbook Mini Hack! This year’s contest revolves around creating interesting animations using MATLAB.
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Hi All,
I'm currently attempting to implement a Hodgkin-Huxley-type model of membrane potential, ideally I would like a species that represents the membrane potential as its own distinct entity, so as the reference elsewhere. I've currently established a molarity-based work around but it would be great if I could set the units for the species as millivolt, but that throws an error.
Is there an established way to do this? I imagine I'm not the first person to be trying to model a voltage-gated ion channel!
Thank you for your help.
Hello,
I've looked around and I haven't found anything obvious about this, but is it possible to link to species/reactions, graphically, in a non-mass transfer sense? I have areas in my model where it would conceptually make sense to be able to see that species or reactions are linked, but if I link them in the standard way it demands that it be involved in the stoichiometry.
Perhaps some kind of dotted line, or similar?
Thank you, best regards,
Dan
I rarely/never save .fig files
47%
Continue working on it later
16%
Archive for future reference
23%
Share within my organization
10%
Share outside my organization
2%
Other (please leave a comment)
2%
2097 votes
Adam and Heather will be discussing new features in R2023b and answering your questions in a few hours - visit the link below to check out the preview and sign up for notification.
Hello all,
I've been trying to shift my workflow more towards simbiology, it has a lot of very interesting features and it makes sense to try and do everything in one place if it works well..! Part of my hesitancy into this was some bad experiences handling units in the past, though this was almost certainly all out of my own ignorance, relatedly:
Getting onto my question.
In this model I have a species traveling around the body via blow flow, think a basic PBPK model. My species are picomolarities, if everything is already in concentrations, why is it necessary to initially divide by the compartment volume? i.e. 1/Pancreas below.
If my model dealt in molar quantities this would make a lot of sense, the division would represent the transition to concentrations. This, however, now necessitates my parameters be in units of liter/minute, which is actually correct, but I'd like clarification on why it's correct, ha!
Perhaps this is more of a modelling question than a simbiology question, but if there are answers I'd love to hear them. Thanks!
Adam Danz just launched a new blog about MATLAB Graphics and App Building.
As you know, He has been a prolific contributor to MATLAB Answers and one of his answers recently won the Editor's Choice Award.
If there are any topics or questions you are interested in, please share with Adam, and I am sure he will get those into his blog.
4 months ago, the new API was published to access content on the MATLAB Central community. I shared my MATLAB code to access the API at that time, but the team just released the official SDK.
MATLAB toolbox on File Exchange: https://www.mathworks.com/matlabcentral/fileexchange/135567-matlab-central-interface-for-matlab
