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Microscopy Image Browser 2 (MIB2)

version 2.70 (62.5 MB) by Ilya Belevich
MIB2 is an update package for segmentation of multi-dimensional (2D-4D) microscopy datasets
5.0
3 Ratings

42 Downloads

Updated 13 Apr 2021

From GitHub

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With MIB2 you can analyse, segment and visualize various multidimensional datasets from both light and electron microscopy. MIB2 is completely rewritten to follow MVC architecture and brings additional stability among many new features.
See more further details and tutorials on MIB website: http://mib.helsinki.fi
I would like to acknowledge Matlab File Exchange user community and especially the authors whose functions were utilized during development of the program:
http://mib.helsinki.fi/acknowledgements.html
The MIB version 1 is available from here http://se.mathworks.com/matlabcentral/fileexchange/56481-microscopy-image-browser--mib- and recommended for Matlab version: R2011a - 2014a

Cite As

Ilya Belevich (2021). Microscopy Image Browser 2 (MIB2) (https://github.com/Ajaxels/MIB2), GitHub. Retrieved .

Belevich, Ilya, et al. “Microscopy Image Browser: A Platform for Segmentation and Analysis of Multidimensional Datasets.” PLOS Biology, vol. 14, no. 1, Public Library of Science (PLoS), Jan. 2016, p. e1002340, doi:10.1371/journal.pbio.1002340.

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Belevich, Ilya, and Eija Jokitalo. DeepMIB: User-Friendly and Open-Source Software for Training of Deep Learning Network for Biological Image Segmentation. Cold Spring Harbor Laboratory, July 2020, doi:10.1101/2020.07.13.200105.

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Comments and Ratings (3)

Ekaterina Sidorenko

Amir Mokhtare

SWPU_HPC_ZY

MATLAB Release Compatibility
Created with R2019b
Compatible with R2014b and later releases
Platform Compatibility
Windows macOS Linux

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Classes

Classes/@Labels

Classes/@Lines3D

Classes/@PoolWaitbar

Classes/@ToggleEventData

Classes/@mibAboutController

Classes/@mibAlignmentController

Classes/@mibAnnotationsController

Classes/@mibBatchController

Classes/@mibBoundingBoxController

Classes/@mibChildView

Classes/@mibChopDatasetController

Classes/@mibController

Classes/@mibCropController

Classes/@mibCropObjectsController

Classes/@mibDatasetInfoController

Classes/@mibDebrisRemovalController

Classes/@mibDeepController

Classes/@mibDragNDropControl

Classes/@mibExternalDirsController

Classes/@mibGraphcutController

Classes/@mibHistThresController

Classes/@mibImage

Classes/@mibImageAdjController

Classes/@mibImageArithmeticController

Classes/@mibImageFiltersController

Classes/@mibImageMorphOpsController

Classes/@mibImageSelectFrameController

Classes/@mibImageUndo

Classes/@mibImportOmeroController

Classes/@mibKeyShortcutsController

Classes/@mibLines3DController

Classes/@mibLogListController

Classes/@mibMakeMovieController

Classes/@mibMeasure

Classes/@mibMeasureToolController

Classes/@mibMembraneDetectionController

Classes/@mibModel

Classes/@mibMorphOpsController

Classes/@mibObjSepController

Classes/@mibPreferencesController

Classes/@mibRandomDatasetController

Classes/@mibRandomRestoreDatasetController

Classes/@mibRechopDatasetController

Classes/@mibResampleController

Classes/@mibRoiRegion

Classes/@mibSnapshotController

Classes/@mibStatisticsController

Classes/@mibStereologyController

Classes/@mibSupervoxelClassifierController

Classes/@mibTipsController

Classes/@mibUpdateCheckController

Classes/@mibView

Classes/@mibVolRenController

Classes/@mibWatershedController

Classes/@mibWoundHealingAssayController

Classes/@volrenAnimationController

Development/mibPluginGUI_ver1

Development/mibPluginGUI_ver2_Batch_compatible

Development/mibPluginGUI_ver3_appDesigner

Development/mibPlugin_withoutGUI

GuiTools

GuiTools/volren

ImportExportTools

ImportExportTools/Amira

ImportExportTools/BioFormats

ImportExportTools/BioFormats/private

ImportExportTools/Fiji

ImportExportTools/HDF5

ImportExportTools/IMOD

ImportExportTools/IMOD/@ImodChunk

ImportExportTools/IMOD/@ImodChunk/private

ImportExportTools/IMOD/@ImodContour

ImportExportTools/IMOD/@ImodContour/private

ImportExportTools/IMOD/@ImodMesh

ImportExportTools/IMOD/@ImodMesh/private

ImportExportTools/IMOD/@ImodModel

ImportExportTools/IMOD/@ImodModel/private

ImportExportTools/IMOD/@ImodObject

ImportExportTools/IMOD/@ImodObject/private

ImportExportTools/IMOD/@MRCImage

ImportExportTools/IMOD/@MRCImage/private

ImportExportTools/IMOD/Visualization

ImportExportTools/Imaris

ImportExportTools/Imaris/@IceImarisConnector

ImportExportTools/MatTomo/@ImodChunk

ImportExportTools/MatTomo/@ImodChunk/private

ImportExportTools/MatTomo/@ImodContour

ImportExportTools/MatTomo/@ImodContour/private

ImportExportTools/MatTomo/@ImodMesh

ImportExportTools/MatTomo/@ImodMesh/private

ImportExportTools/MatTomo/@ImodModel

ImportExportTools/MatTomo/@ImodModel/private

ImportExportTools/MatTomo/@ImodObject

ImportExportTools/MatTomo/@ImodObject/private

ImportExportTools/MatTomo/@MRCImage

ImportExportTools/MatTomo/@MRCImage/private

ImportExportTools/MatTomo/Utils

ImportExportTools/MatTomo/Visualization

ImportExportTools/Omero

ImportExportTools/export_fig

ImportExportTools/nrrd

Plugins/IntensityAnalysis/TripleAreaIntensity

Plugins/Organelle Analysis/SurfaceArea3D

Plugins/Plasmodesmata/CellWallThickness

Plugins/Plasmodesmata/SpacialControlPoints

Plugins/Tutorials/GuiTutorial

Tools

Tools/CellMigration

Tools/FastMarching

Tools/FastMarching/functions

Tools/FastMarching/shortestpath

Tools/Frangi

Tools/HistThresh

Tools/RandomForest/MembraneDetection

Tools/RandomForest/RF_Class_C

Tools/RandomForest/RF_Reg_C

Tools/RegionGrowing

Tools/Supervoxels

Tools/matGeom/geom2d

Tools/matGeom/geom3d

jars/xlwrite

techdoc

Plugins/IntensityAnalysis/TripleAreaIntensity

Plugins/Organelle Analysis/SurfaceArea3D

techdoc