Medical software for Processing multi-Parametric images Pipelines
More information available in our publication (https://www.frontiersin.org/articles/10.3389/fninf.2020.594799/full):
MP3: Medical software for Processing multi-Parametric images Pipelines.
Brossard el al.; Frontiers in Neuroinformatics, 2020, 14, 53.
Presentation and tutorials are available here !
MP³ is an open source software aimed to support preclinical and clinical researchers for image processing studies. This Matlab toolbox offers a graphical interface that helps to process medical images. Here are the most important tools included in MP³ :
Import medical images (e.g. DICOM, NIFTI, Bruker, …) and convert them to nifti/json format
Visualize images (2D to 5D data)
Process (e.g. registration, model fit, filters, …)
Analyze (e.g. ROIs, scatterplots, …) medical images.
Standard processes from SPM or FSL can be called as well as custom fonctions. Complex postprocessing pipelines can be created and applied to mutiparametric (e.g. MRI T1w + MRI T2w,…), multidimensional (e.g. spatial +temporal+echoes,…) or multimodal (e.g. MRI +CT, …) data. Once defined in a single patient, these processes can be stored and applied to a larger database using parallel architectures. MP³ was initially created in the Grenoble Institute of Neurosciences (France) to process multiparametric MRI protocols (anatomy+relaxometry+perfusion) in cohorts of +500 animals.
SUMMARY Poster (ENGLISH) (FRENCH): poster presented at the 4th Congress of the SFRMBM (Strasbourg).
In order to fully enjoy MP³, you have to meet the following requirements:
Matlab 2017b or higher
Toolboxes (Mandatory : Image Processing Toolbox -- Recommended : Statistics and Machine Learning Toolbox ; Parallel Computing Toolbox)
Java 8 or higher
Data to process in Bruker / DICOM / Philips / Nifti format
This project is developed in the Grenoble Institut of Neurosciences by the team Neuroimaging and brain perfusion
The main contributors of this project are : Clément Brossard and Benjamin Lemasson
keys words : animal, ants, asl, brain extraction, bruker, cbv, clinical, clustering, compute tomography, conversion, ct, database, dicom, fit, fsl, human, image analysis, image processing, image registration, mask, mouse, mri, multiparametric, parrec, perfusion, pipeline, preclinical, radiomic, radiomics, rat, so2, spm, t1, T2, T2*, vsi
benjamin lemasson (2021). MP3 a medical imaging toolbox (MRI, CT, PET...) (https://github.com/nifm-gin/MP3/releases/tag/v1.3), GitHub. Retrieved .
Brossard, C., Montigon, O., Boux, F., Delphin, A., Christen, T., Barbier, E. L., & Lemasson, B. (2020). MP3: Medical software for Processing multi-Parametric images Pipelines. Frontiers in Neuroinformatics, 14, 53.
Excellent toolbox, many functionalities are useful, thanks. I used it to create my ROI on MRI images, generate my parametric maps and interpret my results (clustering). The pipeline process is smart and easy to use.
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