116 results

This repository contains a Japanese version of a published repository "Electrophysiology tutorial for neuroscience" by Shubo Chakrabarti htt

Electrophysiology-Tutorial-for-Neuroscience_jpThis repository contains a Japanese version of a published repository "Electrophysiology tutorial for neuroscience" by Shubo Chakrabarti

This is a tutorial for key data analysis steps used by neuroscientists - filtering, spike extraction, PCA, clustering, and spectral analysis

Electrophysiology data analysis

Clarinet is a MATLAB® app designed to analyze electrophysiology experiments.Developed for neuroscience research, Clarinet allows you to analyze neuronal signals acquired with a variety of

Brainstorm

Version 3.4.0.0

by Martin Cousineau

Brainstorm: Open source application for MEG/EEG data analysis

Brainstorm is a collaborative, open-source application dedicated to the analysis of brain recordings: MEG, EEG, fNIRS, ECoG, depth electrodes and animal electrophysiology. Our objective is to share a

WinWCP MATLAB Importer

Version 1.2.0.0

by David

Import and Plot WinWCP Patch Clamp Electrophysiology Files into MATLAB

Symphony

Version 2.2.3.0

by Mark Cafaro

Data Acquisition System

App developed for cardiac electrophysiology research

Application developed for cardiac electrophysiology research. By David de Diego Maffrand, at ITACA institute, UPV.

electroCUDA

Version 0.0.200

by Kevin Tan

Robust pelectrophysiology tools with GPU acceleration

for electrophysiology. Core features include noise-resistant signal processing, robust statistics & extensive hardware acceleration.ElectroCUDA is intended for any multichannel field potential

sg-s/kontroller

Version 1.1.0.0

by srinivas.gs

Wrapper for MATLAB DAQ. Easy recording, instrument control for experiments. e.g. electrophysiology.

A toolbox for biological signal modeling and processing, written mainly in Matlab

bombcell

Version 1.6.0

by Julie Fabre

Automated manual curation and cell classification of spike-sorted electrophysiology data in MATLAB. Fine-tuned for kilosorted Neuropixels da

💣 Bombcell: find bombshell cells! 💣 Manual curation of electrophysiology spike sorted units is slow, laborious, and hard to standardize and reproduce. Bombcell is a powerful toolbox that addresses

Kilosort

Version 1.0.0.0

by Marius Pachitariu

Fast and accurate spike sorting toolbox

a version of abfload which is capable of reading abf 2.0 files

Psth

Version 1.0.0.0

by Rajiv Narayan

Computes the peri-stimulus time histogram for neural spike times

Data Browser

Version 1.0.0.0

by Phil Larimer

A utility to browse data files that involve one or more channels of data over time.

A spike raster plot from spike time stamps with optional trial and group data.

MEAnalyzer

Version 2023.01.16

by Raha Dastgheyb

Anakyze spike trains exported from multi-electrode arrays

Plotting and Analysis of Neuroscience Database-Oriented Research Applications

PANDORA is a Matlab Toolbox for analyzing neuronal electrophysiology data and constructing databases. PANDORA: Makes database management accessible from your electrophysiology project; Works

openep-core

Version 1.0.03

by Steven

Core OpenEP code - Matlab implementation

OpenEP is a free and feature-full implementation of data parsing and analysis tools for cardiac electrophysiology research. OpenEP Data Parsing Modules allow proprietary data formats from major

Set of functions for the basic analysis of spike data from neurophysiological experiments

A class wrapper for the MODTRAN 5 atmospheric radiative transfer code.

Rasterplot

Version 1.0.0.0

by Rajiv Narayan

Plotting Routine to display neural spike trains

Real time channel streaming with the CED's Power1401 device.

Detection of location of spike times

Implements an improved regularity analysis for spike trains obtained from auditory neurons.

Estimating inhibition, excitation and total synaptic conductance from intracellular recordings.

doseResponse

Version 1.2.0.0

by Ritchie Smith

Plots dose/response curve and calculates EC50 and Hill Coefficient.

Plots spike rasters from spike times or binary trains. Faster than most implementations.

abfload

Version 1.4.0.0

by Harald Hentschke

abfload imports data in the Axon abf format (three different recording modes).

spike_remove

Version 1.0.0.0

by Rune W Berg

This function identifies and removes spikes fra a trace of and membrane potential recording.

Algorithm from Fraser and Schwartz, "Recording from the same neurons chronically in motor cortex"

Simulink implementation of a sophisticated ventricular action potential

myocyte electrophysiology: a theoretical investigation.Biophys J. 2007 92:1522-1543.The action potential is elicited by the block named Stimulus : 1 Hz is the initial condition.Initial conditions of the

Kernel density estimation with bandwidths locally adapted to data.

Instructions and m-files for setting up a remote-controlled multielectrode dish perfusion system.

Demo simulator of a firing biological neuron.

mPhys

Version 1.2.0.0

by Phil Larimer

Software for acquisition and manipulation of electrophysiological data from neurons.

Identifies groups of linearly independent columns in a cell array A

Read files generated by the Intan Technologies GUI for recording multichannel data.

Matlab class to import HEKA Patchmaster files

Detect postsynaptic currents or potentials

Utilities for managing Neuropixel SpikeGLX datasets, Kilosort2 sorting, waveform extraction and other tools

SqueakySpk v0.1

Version 1.0.0.0

by Jon Newman

SQUEAKYSPK: Matlab class for making extracellular, microelectrode array data squeaky clean.

A MATLAB implementation of the DeepInterpolation principle.

. The resulting prediction is free of independent noise such as shot noise (imaging) or thermal noise (electrophysiology). If the signal is well predicted by these preeceding and succeeding frames, as in

A MATLAB toolbox for interacting with the Allen Brain Observatory

readPLXFileC

Version 1.0.0.0

by Benjamin Kraus

A MEX function to read a PLX data file (Plexon, Inc.).

This code can be used to spectrally analyze a an ABR ASCII waveform by windowing and zero padding.

SincResample resamples signals to arbitrary lengths/frequencies and/or timeshifts them

Matlab code for interacting with the Open Ephys GUI.

Extract Hodgkin-Huxley type ion channel parameters from a Neurofit report file.

This algorithm calculates the correlated spectral entropy (CorSE) based functional connectivity.

Obtains the current source density from local field potential data recorded from a linear electrode array

APanalysis

Version 1.2.0.0

by Roman Popov

Calculates AP amplitude and timing, half-widths, threshold voltage, and frequency of firing

MClust

Version 4.5

by A David Redish

MClust is a Matlab-based spike sorting toolbox for the separation of putative cells from multi-site neurophysiological recordings. It is pa

Automated analysis of spike count frequency, io curves and AP properties from WinWCP files.

Spike Extraction Tool

FeeLab/seqNMF

Version 1.0.0.0

by SeqNMF FeeLab

An algorithm for unsupervised discovery of sequential structure

Spike Detection

calculates peri-stimulus time histogram (PSTH) + variance of neural spike times

ReadNVT

Version 1.0.0.0

by Forrest Collman

Reads in a Neuralynx NVT Cheetah binary file into Matlab

loadVclampAbf

Version 1.0.0.0

by Cengiz Gunay

Load I and V traces from a pClamp ABF file that contains voltage clamp data

Load more