Plugins Menu

This menu allows access to custom plugins.

The plugins should be placed under mib->Plugins directory as PLUGIN_GROUP_NAME/PLUGIN_NAME, where PLUGIN_GROUP_NAME is a directory with similarly grouped plugins. PLUGIN_NAME - is a directory with the actual plugin. The name of controller for each plugin should be formed as: PLUGIN_NAMEController, for example mytestController.m. So the full filename may look like this:

c:\MATLAB\Scripts\mib\Plugins\MyPlugings\myPlugin\myPluginController.m

Please check the contents of Plugins->Tutorials for examples. See more in the corresponding tutorials .

Contents

File processing

Intensity analysis

Plugins for analysis of intensities in images

Organelle analysis

Analysis of biological objects

Plasmodesmata

Plugins for analysis of plasmadesmata in roots of Arabidopsis thaliana. For details please follow to this publication: Paterlini A, Belevich I, Jokitalo E, Helariutta Y., Computational Tools for Serial Block Electron Microscopy Reveal Plasmodesmata Distributions and Wall Environments, Plant Physiol. 2020 Sep;184(1):53-64. doi: 10.1104/pp.20.00396. Epub 2020 Jul 23. <https://pubmed.ncbi.nlm.nih.gov/32719057/>

Tutorials

Demo examples from the tutorials section: <http://mib.helsinki.fi/tutorials_programming.html>

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