Answered

Will Matlab work on ARM based MacBook stated to launch in the fall of 2020?

Please see this MATLAB Answers post for the latest news on running MATLAB on Apple Silicon: https://www.mathworks.com/matlabcent...

Will Matlab work on ARM based MacBook stated to launch in the fall of 2020?

Please see this MATLAB Answers post for the latest news on running MATLAB on Apple Silicon: https://www.mathworks.com/matlabcent...

10 months ago | 2

Answered

Will Matlab support future Apple computers based on their in house ARM silicon?

Please see this MATLAB Answers post for the latest news on running MATLAB on Apple Silicon: https://www.mathworks.com/matlabcent...

Will Matlab support future Apple computers based on their in house ARM silicon?

Please see this MATLAB Answers post for the latest news on running MATLAB on Apple Silicon: https://www.mathworks.com/matlabcent...

10 months ago | 1

Solved

Eliminate Polysyllabics: Long live short words!

Given a string s1, return s2 in which all the words with more than one syllable have been removed. To make things simple, we ...

11 months ago

Answered

Which module is best for modeling large cell populations?

As stated, your question is too general to answer with specific recommendations. SimBiology is certainly useful for certain kind...

Which module is best for modeling large cell populations?

As stated, your question is too general to answer with specific recommendations. SimBiology is certainly useful for certain kind...

11 months ago | 0

Answered

Simbiology with matlab background

It's very hard to say what's going on without having reproduction steps. Can you share your model and the steps you used to simu...

Simbiology with matlab background

It's very hard to say what's going on without having reproduction steps. Can you share your model and the steps you used to simu...

1 year ago | 0

| accepted

Answered

Invalid Reaction Value error for SBML transfer from COPASI to Matlab

Hi Darke, This is a bug in how SimBiology imports reaction modifiers. The model is imported incorrectly if either the name of a...

Invalid Reaction Value error for SBML transfer from COPASI to Matlab

Hi Darke, This is a bug in how SimBiology imports reaction modifiers. The model is imported incorrectly if either the name of a...

1 year ago | 1

| accepted

Answered

AUC for Pharmacokinetic Study

The simplest way to calculate AUC in MATLAB using the trapezoidal rule is probably to use the function trapz. Within SimBiology,...

AUC for Pharmacokinetic Study

The simplest way to calculate AUC in MATLAB using the trapezoidal rule is probably to use the function trapz. Within SimBiology,...

1 year ago | 1

| accepted

Answered

Simultaneous Fit of IV and PO data using SimBiology

Yes, it is possible to fit two model outputs at the same time. Do you want to do this using sbiofit or a fit program in the SimB...

Simultaneous Fit of IV and PO data using SimBiology

Yes, it is possible to fit two model outputs at the same time. Do you want to do this using sbiofit or a fit program in the SimB...

1 year ago | 0

Answered

fastawrite error with string array as input datatype

You generally should be able to cell arrays of character vectors and string vectors interchangeably, and a character vector inte...

fastawrite error with string array as input datatype

You generally should be able to cell arrays of character vectors and string vectors interchangeably, and a character vector inte...

1 year ago | 0

| accepted

Answered

Simutaneous parameter estimation for multiple compartments and multiple dataset

Hi, Depending on the details of the estimation, you might be able to use sbiofit for this sort of problem by merging the 3 data...

Simutaneous parameter estimation for multiple compartments and multiple dataset

Hi, Depending on the details of the estimation, you might be able to use sbiofit for this sort of problem by merging the 3 data...

1 year ago | 0

Answered

Semicolons in SimBiology species names: just characters, or functionally active?

Hi Jim, You can name your species almost anything. The naming restrictions are documented here. However, if the name is not a v...

Semicolons in SimBiology species names: just characters, or functionally active?

Hi Jim, You can name your species almost anything. The naming restrictions are documented here. However, if the name is not a v...

1 year ago | 0

| accepted

Answered

using a nested for loop to edit a structure

As mentioned in the comments, if you want to compare one atom at a time, the proper way to index is Atom(i3).AtomSerNo. But if y...

using a nested for loop to edit a structure

As mentioned in the comments, if you want to compare one atom at a time, the proper way to index is Atom(i3).AtomSerNo. But if y...

1 year ago | 0

Answered

FRET data analysis with simulation

Hi Parul, This sounds like a fitting problem that can be solved using sbiofit from the command line or using a fit program with...

FRET data analysis with simulation

Hi Parul, This sounds like a fitting problem that can be solved using sbiofit from the command line or using a fit program with...

1 year ago | 0

Answered

In Simbiology, Is there a way to set a slider with an integer scaling?

It is not currently possible to constrain the value of a slider to an integer. It's a great suggestion for a future enhancement,...

In Simbiology, Is there a way to set a slider with an integer scaling?

It is not currently possible to constrain the value of a slider to an integer. It's a great suggestion for a future enhancement,...

1 year ago | 0

Answered

What is the difference between BoundaryCondition and ConstantAmount?

Constant=true means that the value of a species cannot change during the course of a simulation. It can only be modified at time...

What is the difference between BoundaryCondition and ConstantAmount?

Constant=true means that the value of a species cannot change during the course of a simulation. It can only be modified at time...

1 year ago | 0

| accepted

Answered

implement quasi zeroth order kinetic in Simbio

Hi, Whenever you have a discontinuous step change like this in your model, you should include either doses or events at the dis...

implement quasi zeroth order kinetic in Simbio

Hi, Whenever you have a discontinuous step change like this in your model, you should include either doses or events at the dis...

1 year ago | 0

Answered

Any simulation speed differences between models loaded with SimBiology() vs sbioloadproject?

I don't expect you to see any noticeable performance impact when simulating a model from the command line, while the same model ...

Any simulation speed differences between models loaded with SimBiology() vs sbioloadproject?

I don't expect you to see any noticeable performance impact when simulating a model from the command line, while the same model ...

1 year ago | 0

| accepted

Answered

simbiology problem PK PD modeling

Hi, The problem is that the two variables "time" and "drug" in your data were imported as text instead of numbers. I'm not sure...

simbiology problem PK PD modeling

Hi, The problem is that the two variables "time" and "drug" in your data were imported as text instead of numbers. I'm not sure...

1 year ago | 0

Answered

How can I find 4 constants values from and indirect fitting value?

I see that the SimBiology product is tagged for this post, but the attached files are not using SimBiology. I'm one of the devel...

How can I find 4 constants values from and indirect fitting value?

I see that the SimBiology product is tagged for this post, but the attached files are not using SimBiology. I'm one of the devel...

1 year ago | 0

Answered

Why does my .sbproj file can't open on other's computer?

This is expected. Please see the following discussion: https://www.mathworks.com/matlabcentral/answers/500762-loading-simbiolog...

Why does my .sbproj file can't open on other's computer?

This is expected. Please see the following discussion: https://www.mathworks.com/matlabcentral/answers/500762-loading-simbiolog...

1 year ago | 0

| accepted

Answered

How to correctly compile a function containing variables with dimension and call it in SimBiology

Hi, The issue you are seeing is addressed in the "Tip" on the documentation for UnitConversion. The problem is that you are ha...

How to correctly compile a function containing variables with dimension and call it in SimBiology

Hi, The issue you are seeing is addressed in the "Tip" on the documentation for UnitConversion. The problem is that you are ha...

1 year ago | 1

Answered

Issues with doses/variants in parfor loop in SimBiology

First, what version of SimBiology are you using? Prior to R2019b, there was a problem that prevented objects from getting sent t...

Issues with doses/variants in parfor loop in SimBiology

First, what version of SimBiology are you using? Prior to R2019b, there was a problem that prevented objects from getting sent t...

1 year ago | 0

Answered

It is possible to add a constant input term (without reaction rate) for a specie in the diagram view in SIMBIOLOGY?

If I understand your question correctly, it sounds like you want to use a rate rule. If you want to build a rate rule in the dia...

It is possible to add a constant input term (without reaction rate) for a specie in the diagram view in SIMBIOLOGY?

If I understand your question correctly, it sounds like you want to use a rate rule. If you want to build a rate rule in the dia...

1 year ago | 0

| accepted

Answered

error saying "dimentional analysis failed for reaction."

Yes, nanomole is a unit with dimensions of amount, and nanomolar is a unit with dimensions of concentration. Can you share your...

error saying "dimentional analysis failed for reaction."

Yes, nanomole is a unit with dimensions of amount, and nanomolar is a unit with dimensions of concentration. Can you share your...

1 year ago | 0

Answered

SUNDIALS installation in MATLAB

What exactly did you download? Can you provide the website or download link? I'm not sure how we can help you without knowing mo...

SUNDIALS installation in MATLAB

What exactly did you download? Can you provide the website or download link? I'm not sure how we can help you without knowing mo...

1 year ago | 0

Answered

What is smooth curve?

I'm not sure I fully understand your question. If you're asking what the checkbox labeled "Show smooth curve" does, you can see...

What is smooth curve?

I'm not sure I fully understand your question. If you're asking what the checkbox labeled "Show smooth curve" does, you can see...

1 year ago | 0

Answered

Namespace and other html / xml information in SimBiology Notes

I would recommend either plain text or XHTML 1.0 as your format. sbmlexport will export both of these to SBML as XHTML 1.0, whic...

Namespace and other html / xml information in SimBiology Notes

I would recommend either plain text or XHTML 1.0 as your format. sbmlexport will export both of these to SBML as XHTML 1.0, whic...

1 year ago | 1

| accepted

Answered

Loading simbiology models created in MATLAB 2019b in previous version of MATLAB

In general, we cannot guarantee this kind of compatibility (which is called "forward compatibility"). In practice, SimBiology mo...

Loading simbiology models created in MATLAB 2019b in previous version of MATLAB

In general, we cannot guarantee this kind of compatibility (which is called "forward compatibility"). In practice, SimBiology mo...

1 year ago | 0

| accepted

Answered

How to implement multiple error model?

It depends on whether you are doing nonlinear regression or nonlinear mixed-effects modeling. If you are doing nonlinear regress...

How to implement multiple error model?

It depends on whether you are doing nonlinear regression or nonlinear mixed-effects modeling. If you are doing nonlinear regress...

1 year ago | 0

| accepted

Answered

seqpdist Kimura "method not available for amino acids" even though working with nucleotides

As Geoff points out in the comments, the problem is that several of the default option values don't work for the Kimura distance...

seqpdist Kimura "method not available for amino acids" even though working with nucleotides

As Geoff points out in the comments, the problem is that several of the default option values don't work for the Kimura distance...

1 year ago | 0

| accepted