Previous Research and Development

COVID-19 Research and Development with MATLAB and Simulink

CORA: Toolbox for Reachability Analysis

Matthias Althoff, MATLAB File Exchange, August 4 2021

Genome Scale-Differential Flux Analysis reveals deregulation of lung cell metabolism on SARS-CoV-2 infection

Piyush Nanda and Amit Ghosh, PLOS Computational Biology, April 9 2021

A novel Covid-19 and pneumonia classification method based on F-transform

Turker Tuncer et al, Chemometrics and Intelligent Laboratory Systems, March 15 2021

Long-term forecasting of the COVID-19 epidemic

The Wellcome Centre for Human Neuroimaging, UCL, 2021

Does public fear that bats spread COVID-19 jeopardize bat conservation?

Manman Lu et al, Biological Conservation, February 2021

Impact of Public Health Education Program on the Novel Coronavirus Outbreak in the United States

Enahoro Iboi et al, Frontiers: Public Health, March 15 2021

Study of the operation of taxi cars in an emergency situation

Dimitar Grozev et al, IOPScience, September 2020

DON: Deep Learning and Optimization-Based Framework for Detection of Novel Coronavirus Disease Using X-ray Images

Gaurav Dhiman et al, Interdisciplinary Sciences: Computational Life Sciences, February 15 2021

Global sensitivity analysis of COVID-19 mathematical model

Zizhen Zhang et al, Alexandria Engineering Journal, February 2021

Covid-19 transmission modelling of students returning home from university

Paul R. Harper et al, Health Systems, January 17 2021
paper and GitHub repo

A SIQ mathematical model on COVID-19 investigating the lockdown effect

Archana Singh Bhaduria, Infectious Disease Modelling, January 7 2021

Effects of Covid-19 on Crude Oil Price and Future Forecast Using a Model Application and Machine Learning

Azubuike H Amadi et al, European Journal of Engineering Research and Science (EJERS), December 2020

The interplay of movement and spatiotemporal variation in transmission degrades pandemic control

Nicholas Kortessis et al, Proceedings of the National Academy of Sciences, October 5 2020

A dynamical framework for modeling fear of infection and frustration with social distancing in COVID-19 spread

Matthew D. Johnston and Bruce Pell, Mathematical Biosciences and Engineering, August 18 2020

Value of PET/CT and MATLAB in Detection of COVID-19 in an Oncology Patient - Case Report

Michael Masoomi et al, American Journal of Internal Medicine, August 25 2020

Animation of COVID-19 Weekly Cases in England

Duncan Barclay, MATLAB File Exchange, July 2020

A systematic approach for COVID-19 predictions and parameter estimation

Vishal Srivastava et al, Personal and Ubiquitous Computing, November 6 2020

Analysis of second outbreak of COVID-19 after relaxation of control measures in India

Xinchen Yu et al, Nonlinear Dynamics, October 10 2020

Analysis of the fractional corona virus pandemic via deterministic modeling

Nguyen Huy Tuan et al, Mathematical Models in the Applied Sciences, September 6 2020

Group Testing for COVID-19: How to Stop Worrying and Test More

Lakshmi Narasimhan Theagarajan, arXiv, April 15 2020
paper preprint and MATLAB code

Stability analysis of mathematical model new corona virus (COVID-19) disease spread in population

Abderrahim Labzai et al, Communications in Mathematical Biology and Neuroscience, July 14 2020

Modeling and forecasting the spread tendency of the COVID-19 in China

Deshun Sun et al, Advances in Difference Equations, 2020

A cost–benefit analysis of the COVID-19 disease

Rowthorn and Maciejowski, Oxford Review of Economic Policy, August 29 2020

Modeling Reading Ability Gain in Kindergarten Children during COVID-19 School Closures

Xue Bao et al, Internal Journal of Environmental Research and Public Health, September 1 2020

COVID19 Data Fitting with Linear and Nonlinear Regression

Lorand Gabriel Parajdi, MATLAB File Exchange, August 2020


Milan Batista, MATLAB File Exchange, March 2020
MATLAB function

Short-term predictions and prevention strategies for COVID-19: A model-based study

Sk Shahid Nadim et al, arXiv, July 22 2020
paper preprint

Battling COVID-19 with disinfecting robots

Behind the Headlines, April 23, 2020
blog post

Deep Learning for Medical Imaging: COVID-19 Detection

Barath Narayanan, University of Dayton Research Institute
Deep Learning blog, March 18, 2020
blog post with MATLAB code

Social Distancing Monitoring System

Wanbin Song, MATLAB File Exchange, June 10 2020

Antihypertensive drugs in COVID-19 infection

Pinto-Siestsma et al, European Heart Journal, June 5 2020

Modeling and prediction of COVID-19 in Mexico applying mathematical and computational models

Torrealba-Rodriguez O et al, Chaos, Solitons, and Fractals, May 30 2020

Forecast Possible Risk for COVID-19 Epidemic Dissemination Under Current Control Strategies in Japan

Zhongxiang Chen et al, Internal Journal of Environmental Research and Public Health, May 29 2020

An SIR model with behavior

John Cochrane, The Grumpy Economist, May 4 2020
blog with MATLAB code

Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus–Infected Pneumonia

Qun Li, M. Med et al, New England Journal of Medicine (NEJM), March 26, 2020

Data-based analysis, modelling and forecasting of the COVID-19 outbreak

Cleo Anastassopoulou et al, NCBI, March 31, 2020


Ajitesh Srivastava et al, arXiv, April 27 2020
paper preprint and MATLAB code and video

Computer Vision For COVID-19 Control: A Survey

Anwaar Ulhaq et al, arXiv, May 5 2020
paper preprint

MATLAB Wrapper for Johns Hopkins University's COVID-19 Data Set

Brian Munsky, GitHub, March 2020
GitHub repo with data, MATLAB code and app

Healthcare impact of COVID-19 epidemic in India: A stochastic mathematical model

Kaustuv Chatterjee et al, ScienceDirect, April 2 2020

Analyzing Novel Corona Virus COVID-19 Dataset

Toshi Takeuchi, Loren on the Art of MATLAB blog, March 16, 2020
blog post with MATLAB code using Kaggle dataset

Analytical and qualitative investigation of COVID-19 mathematical model under fractional differential operator

Kamal Shah et al, Mathematical Methods in the Applied Sciences, August 22 2021

A model and predictions for COVID-19 considering population behavior and vaccination

Thomas Usherwood et al, Nature: Scientific Reports, June 8 2021

Tracking COVID-19 using online search

Vasileios Lampos et al, NPJ Digital Medicine, February 8 2021

Prediction of Disease Progression of COVID-19 Based upon Machine Learning

F. Xu et al, International Journal of General Medicine, April 29 2021

A renewal equation model to assess roles and limitations of contact tracing for disease outbreak control

Francesca Scarabel et al, Royal Society Open Science, March 17 2021
paper and GitHub repo

Functional profiling of COVID‑19 respiratory tract microbiomes

Niina Haiminen et al, Nature: Scientific Reports, March 19 2021

The Influence of Latent and Chronic Infection on Pathogen Persistence

Xander O'Neill et al, Mathematics, April 29 2021

Fatigue following COVID-19 infection is not associated with autonomic dysfunction

Liam Townsend et al, PLOS ONE, February 25 2021

Cost and social distancing dynamics in a mathematical model of COVID-19 with application to Ontario, Canada

I. R. Moyles et al, Royal Society Open Science, February 24 2021

Densely connected convolutional networks-based COVID-19 screening model

Dilbag Singh et al, Applied Intelligence, February 7 2021

Mathematical modeling and a month ahead forecast of the coronavirus disease 2019 (COVID-19) pandemic: an Indian scenario

Suhail Ganiny and Owais Nisar, Model Earth Sys Environ, January 12 2021

A deep transfer learning model with classical data augmentation and CGAN to detect COVID-19 from chest CT radiography digital images

Mohamed Loey et al, Special Issue: Bio-Inspired Computing for Deep Learning Applications, October 26 2020

Face masks considerably reduce COVID-19 cases in Germany

Timo Mitze et al, Proceedings of the National Academy of Sciences, December 3 2020

A fractional order approach to modeling and simulations of the novel COVID-19

Isaac Owusu-Mensah et al, Adv Differ Equ, December 3 2020

The effectiveness of social bubbles as part of a Covid-19 lockdown exit strategy, a modelling study

Trystan Leng et al, Wellcome Open Research, September 10 2020
pre-review paper

Modelling the role of optimal social distancing on disease prevalence of COVID-19 epidemic

Sangeeta Saha & G.P. Samanta, International Journal of Dynamics and Control, November 9 2020

Effects of information-induced behavioural changes during the COVID-19 lockdowns: the case of Italy

Bruno Buonomo and Rosella Della Marca, Royal Society Open Science, September 18 2020

On modeling of coronavirus-19 disease under Mittag-Leffler power law

Samia Bushnaq et al, Advances in Difference Equations, September 11 2020

Applications in Response to COVID-19: Mask Detection

Wanbin Song, Deep Learning, June 11 2020
Blog post and MATLAB code

The end of social confinement and COVID-19 re-emergence risk

Leonardo López and Xavier Rodó, Nature, June 2020

Dynamic modeling and analysis of COVID‐19 in different transmission process and control strategies

Lin Hu and Lin‐Fei Nie, Mathematical Methods in the Applied Sciences, August 29 2020

Herd immunity thresholds for SARS-CoV-2 estimated from unfolding epidemics

Ricardo Aguas et al, medRxiv, August 31 2020
paper preprint and GitHub MATLAB repo

Non Pharmaceutical Interventions for Optimal Control of COVID-19

Muhmmad Zamir et al, NIH NLM, July 21 2020


Scott Payne, MATLAB File Exchange, June 24 2020

COVID 19 Simulator

Nir Gavish, MATLAB File Exchange, June 30 2020

Sequence analysis of SARS-CoV-2 genome reveals features important for vaccine design

Jacob Kames et al, bioRxiv, March 31 2020
paper preprint

Covid-19: Testing Inequality in New York City

Stephanie Schmitt-Grohé et al, National Bureau of Economic Research, April 2020
working paper

Impact of population mask wearing on Covid-19 post lockdown

Babak and Balaban, Infectious Microbes & Diseases, June 5 2020

Assessing the Risks of Spatial Spread of the New Coronavirus COVID-19

Jiang X et al, Journal of Bacteriology and Mycology, June 4 2020

Insights into the dynamics and control of COVID-19 infection rates

Mark J. Willis et al, PubMed Central, May 28 2020

IKONOS: An intelligent tool to support diagnosis of Covid-19 by texture analysis of x-ray images

Juliana Carneiro Gomes et al, medRxiv, May 9 2020
paper preprint and GitHub repo

Rare and extreme events: the case of COVID-19 pandemic

Machado & Lopez, Nonlinear Dynamics, May 16 2020

Dynamic causal modelling of COVID-19

Karl J Friston et al, arXiv, April 9 2020
paper preprint and MATLAB SPM tools

A multi-region discrete time mathematical modeling of the dynamics of Covid-19 virus propagation using optimal control

Bouchaib Khajji et al, Journal of Applied Mathematics and Computing, March 1 2020

UK Coronavirus Modelling – match to data

Brian Sutton, April 18 2020
blog post

Deep Learning Analysis of COVID-19 lung X-Rays using MATLAB

FlyLogical,, April 8, 2020
blog post with MATLAB code

In-host Modelling of COVID-19 Kinetics in Humans

Esteban A. Hernandez-Vargas et al, medRxiv, April 15 2020
paper preprint

Ultra-Low-Cost Integrated Silicon-based Transducer for On-Site, Genetic Detection of Pathogens

Estefania Nunez-Bajo et al,, March 23, 2020
paper preprint

Furin and the adaptive mutation of SARS-COV2: a computational framework

Ayesha Sohail et al, Modeling Earth Systems and Environment, August 26 2021

Infection, inflammation and intervention: mechanistic modelling of epithelial cells in COVID-19

Nabil T. Fadai et al, Journal of the Royal Society Interface, February 17 2021

Estimating, monitoring, and forecasting COVID‑19 epidemics: a spatiotemporal approach applied to NYC data

Vinicius V. L. Albani et al, Nature: Scientific Reports, April 27 2021
paper and GitHub data repo

A renewal equation model to assess roles and limitations of contact tracing for disease outbreak control

Francesca Scarabel et al, Royal Society Open Science, April 7 2021

Assessing the role of quarantine and isolation as control strategies for COVID-19 outbreak: A case study

Zaibunnisa Memon et al, Chaos, Solitons & Fractals, March 2021

Impact of social media advertisements on the transmission dynamics of COVID-19 pandemic in India

Rajanish Kumar Rai et al, Journal of Applied Mathematics and Computing, February 27 2021


Ma Luo, File Exchange, February 18 2021

A Model for the Spread of Infectious Diseases with Application to COVID-19

Ricardo A. G. Unglaub and Kathrin Spendier, Challenges, February 5 2021

Empirical model for short-time prediction of COVID-19 spreading

Marti Catala et al, PLOS Computational Biology, December 9 2020

Modeling lung perfusion abnormalities to explain early COVID-19 hypoxemia

Jacob Herrmann et al, Nature Communications, September 28 2020

Patient Flow Dynamics in Hospital Systems During Times of COVID-19: Cox Proportional Hazard Regression Analysis

Sudhir Bhandari et al, Frontiers in Public Health, December 8 2020

Modeling Growth, Containment and Decay of the COVID-19 Epidemic in Italy

Francesco Capuano, Frontiers in Physics, November 30 2020

How long should the COVID-19 lockdown continue?

Jonathan Caulkins et al, PLOS ONE, December 2 2020

A network model of Italy shows that intermittent regional strategies can alleviate the COVID-19 epidemic

Fabio Della Rossa et al, Nature Communications, October 9 2020

The COVID-19 Pandemic in Africa: Predictions using the SIR Model

Musalula Sinkala, medRxiv, June 1 2020
paper preprint and MATLAB code

Topological epidemic model: Theoretical insight into underlying networks

Yoshito Hirata, Chaos: An Interdisciplinary Journal of Nonlinear Science, October 27 2020
paper, MATLAB code

Epidemic Characteristics of COVID-19 in Africa

Lijun Wang et al, Social Physics, September 29 2020

A data driven analysis and forecast of an SEIARD epidemic model for COVID-19 in Mexico

Ugo Avila-Ponce de Leo'n et al, Big Data and Information Analytics, September 23 2020

Haar wavelet collocation approach for the solution of fractional order COVID-19 model using Caputo derivative

Kamal Shah et al, Alexandria Engineering Journal, September 14 2020

Avoiding COVID-19: Aerosol Guidelines

Matthew Evans, medRxiv, June 5 2020
paper preprint

LAMP-Seq: Population-Scale COVID-19 Diagnostics Using Combinatorial Barcoding

Jonathan L. Schmid-Burgk et al, bioRxiv, June 8 2020
paper preprint and MATLAB code

The effect of control measures on COVID-19 transmission in Italy: Comparison with Guangdong province in China

Pei-Yu Liu et al, Infectious Diseases of Poverty, September 16 2020

Parameter Estimation of COVID-19 Pandemic Model with Self Protection

Kassahun Getnet Mekonen et al, medRxiv, August 26 2020
paper preprint

Artificial Intelligence-Empowered Mobilization of Assessments in COVID-19-like Pandemics: A Case Study for Early Flattening of the Curve

Simsek and Kantarci, International Journal of Environmental Research and Public Health, May 14 2020
paper and Cleve's MATLAB simulator link

Modeling shield immunity to reduce COVID-19 epidemic spread

Joshua S. Weitz et al, Nature, May 7 2020
paper and MATLAB code

Short-range airborne route dominates exposure of respiratory infection during close contact

Wenzhao Chen et al, ScienceDirect - Building and Environment, June 2020

Chaos game representation dataset of SARS-CoV-2 genome

Raquel del M. Barbosa and Marcelo A.C. Fernandes, ScienceDirect, June 2020

COVID-19 Predictions in Africa using the SIR-Model

smsinks, MATLAB File Exchange, May 31 2020

A model based study on the dynamics of COVID-19: Prediction and control

Manotosh Mandal et al, Chaos, Solitons & Fractals, May 10 2020

Ultra-Low-Cost Integrated Silicon-based Transducer for On-Site, Genetic Detection of Pathogens

Estefania Nunez-Bajo et al, bioRxiv, March 25 2020
paper preprint

Rapid community-driven development of a SARS-CoV-2 tissue simulator

Yafei Wang, bioRxiv, April 2 2020
paper preprint

Forecasting the timeframe of coronavirus and human cells interaction with reverse engineering

Ayesha Sohail et al, Progress in Biophysics and Molecular Biology, April 29 2020

Equipos y Máquinas en Establecimientos de Salud

Jorge Mírez, jmirezmedical, May 6 2020

Classification of COVID-19 patients from chest CT images using multi-objective differential evolution–based convolutional neural networks

Dilbag Singh et al, European Journal of Clinical Microbiology & Infectious Diseases, April 7 2020

Predictive Monitoring of COVID-19

SUTD Data-Driven Innovation Lab, May 1 2020
Post with links to code and data

COVID-19: Simulating exponential spread in Simulink

Guy Rouleau, Guy on Simulink, March 23, 2020
blog post with downloadable Simulink model

Understanding COVID-19 Research Articles using Text Analytics in MATLAB

Sohini Sarkar, COVID-19 Open Research Dataset Challenge (CORD-19), April 10, 2020
Kaggle blog post with links to MATLAB code

Why it is Important to Take the Virus Seriously – or Why This Isn't Just Like the Flu

Pascal Wallisch, New York University,, March 16, 2020
blog post

Corona Detection using AI--Deep Learning Approach Software to Detect Corona in Lung CT scan

Prasad Kalane, Anubhuti Research & Development Center, March 17, 2020
LinkedIn post with links to MATLAB code

El modelo SEIRV aplicado a la epidemia de coronavirus en Wuhan, China

Francisco Villatoro, La Ciencia de la Mula Francis blog, March 14, 2020
blog post with MATLAB code (en español)

Coronavirus Projections

Wayne Moss, Cummins Inc.,
March 24, 2020
LinkedIn post with MATLAB code