getDictionary

Class: BioIndexedFile

Retrieve reference sequence names from SAM-formatted source file associated with BioIndexedFile object

Syntax

Dict = getDictionary(BioIFobj)

Description

Dict = getDictionary(BioIFobj) returns Dict, a cell array of unique character vectors specifying the names of the reference sequences in the SAM-formatted source file associated with BioIFobj, a BioIndexedFile object.

Input Arguments

BioIFobj

Object of the BioIndexedFile class.

Output Arguments

Dict

Cell array of unique character vectors specifying the reference sequence names in the SAM-formatted source file associated with BioIFobj, a BioIndexedFile object.