Answered
SimBiology getConfigSet does not recognise model object
Hi Alvaro, sbioloadproject will return a struct that contains your model(s). This should work: s = sbioloadproject('RandomNet...

7 years ago | 1

Answered
How to upload KEGG file to Simbiology so I can start analyzing.
Hi Juan Carlos, KEGG files can't be imprted into SimBiology as is. You will need to convert them into SBML files first. There ...

7 years ago | 0

| accepted

Answered
In Simbiology, should the categorical variables be assigned as group variable or covariate in the dataset?
Group variable defines an index for a subject/experiment. In your dataset, ID is a group variable. Gender and age can be both co...

7 years ago | 0

| accepted

Discussion

SimBiology at PAGE 2019
Fulden and I will have a booth at PAGE next week. Come and chat with us to learn the latest with MATLAB and SimBiology for PK/PD...

7 years ago | 0

Solved

Make the vector [1 2 3 4 5 6 7 8 9 10]
In MATLAB, you create a vector by enclosing the elements in square brackets like so: x = [1 2 3 4] Commas are optional, s...

7 years ago

Answered
Question on specifying input to sbiosimulate
Hi Deepa, there might be different reasons to get this error message. A typical one is when one of the fluxes becomes Inf or Na...

7 years ago | 0

Answered
Finding non-constant species in Simbiology Object
What you get is not a function handle but an heterogenous array of SimBiology objects. This array contains a mix of different co...

7 years ago | 1

| accepted

Answered
Question on specifying input to sbiosimulate
There is multiple ways to do this: 1- if you want to run multiple simulations, I recommend to use a SimFunction that will take ...

7 years ago | 1

Answered
Output of sbiosteadystate task
See answer here.

7 years ago | 1

| accepted

Answered
Accessing a variant object
Hi Deepa, you can access the variant content with the dot notation. If your variant is called v, v.Content will be an array of...

7 years ago | 0

| accepted

Answered
How to set up estimation method in sbiofit
Hi Deepa, let me summarize my understanding of your problem and please correct me if I'm wrong: you only have steady state dat...

7 years ago | 0

Answered
How to run the model in SBML file?
Dear Deepa, there is two ways to simulate a model saved in a sbml file: 1. using the SimBiology App You can open the SimB...

7 years ago | 0

| accepted

Submitted

sbioimportBerkeleyMadonna
Imports ODE models in the BerkeleyMadonna(TM) format into a SimBiology(R) model

7 years ago | 3 downloads |

Discussion

Tips and Tricks: Use SimFunction for easy and fast model simulations in scripts
*What is it?* |SimFunction| allows you to _perform multiple simulations in a single line of code_ by providing an interface t...

7 years ago | 0

Answered
Plot StateData at a certain time point in Simbiology
Dear Göran, indeed, you can achieve this by modifying the piece of code contained in the scan plot. Let's say that you want to...

7 years ago | 0

Submitted

Import SBML file with function definitions into SimBiology
Functions to import SBML files containing function definitions into SimBiology.

9 years ago | 2 downloads |

Solved

Times 2 - START HERE
Try out this test problem first. Given the variable x as your input, multiply it by two and put the result in y. Examples:...

10 years ago

Solved

Triangle Numbers
Triangle numbers are the sums of successive integers. So 6 is a triangle number because 6 = 1 + 2 + 3 which can be displa...

10 years ago

Solved

Find the sum of all the numbers of the input vector
Find the sum of all the numbers of the input vector x. Examples: Input x = [1 2 3 5] Output y is 11 Input x ...

10 years ago

Solved

Text processing - Help Johnny write a letter home from camp
Johnny overuses the word 'great'. Write a script that will help him with this and future letters. If a sentence contains more ...

12 years ago