when the secret text contain pair(doubke) character like 'dd',mm' ,'ll', the Y vector reswtores as Nan
1 view (last 30 days)
Show older comments
hello all; i have one problem in this code which is , when the secret text contain pair(double) character like 'dd',mm','oo', the Z vector restore as NaN, how i can solve this problem.
str='steganography is the art and science of covered or hidden';
X={'as modeling of changes in backbone conformation still lacks a computationally efficient solution, we developed a discretisation of the conformational states accessible to the protein backbone similar to the successful rotamer approach in side chains. The BriX fragment database, consisting of fragments from 4 to 14 residues long, was realized through identification of recurrent backbone fragments from a non-redundant set of high-resolution protein structures. brix contains an alphabet of more than 1,000 frequently observed conformations per peptide length for 6 different variation levels. analysis of the performance of brix revealed an average structural coverage of protein structures of more than 99 percent within a root mean square distance of 1 angstrom. globally, we are able to reconstruct protein structures with an average accuracy of 0.48 angstrom rmsd. as expected, regular structures are well covered, but, interestingly, many loop regions that appear irregular at first glance are also found to form a recurrent structural motif, albeit with lower frequency of occurrence than regular secondary structures. larger loop regions could be completely reconstructed from smaller recurrent elements, between 4 and 8 residues long. finally, we observed that a significant amount of short sequences tend to display strong structural ambiguity between alpha helix and extended conformations. when the sequence length increases, this so-called sequence plasticity is no longer observed, illustrating the context dependency of polypeptide structures.'};
for m = 1:numel(X)
Y = bsxfun(@eq,X{m}(:),str);
for n = 2:size(Y,2)
Y(:,n) = Y(:,n) & cumsum(Y(:,n-1))>0;
end
Z = find(any(diff([false(size(str));cumsum(Y)>0],1),2))
end
1 Comment
Accepted Answer
Stephen23
on 25 May 2015
Edited: Stephen23
on 27 May 2015
I think you just need to preallocate the cell array, and then index into it inside the loop:
str = 'steganography is the art and science of covered or hidden';
X = {'as modeling of changes in backbone conformation still lacks a computationally efficient solution, we developed a discretisation of the conformational states accessible to the protein backbone similar to the successful rotamer approach in side chains. The BriX fragment database, consisting of fragments from 4 to 14 residues long, was realized through identification of recurrent backbone fragments from a non-redundant set of high-resolution protein structures. brix contains an alphabet of more than 1,000 frequently observed conformations per peptide length for 6 different variation levels. analysis of the performance of brix revealed an average structural coverage of protein structures of more than 99 percent within a root mean square distance of 1 angstrom. globally, we are able to reconstruct protein structures with an average accuracy of 0.48 angstrom rmsd. as expected, regular structures are well covered, but, interestingly, many loop regions that appear irregular at first glance are also found to form a recurrent structural motif, albeit with lower frequency of occurrence than regular secondary structures. larger loop regions could be completely reconstructed from smaller recurrent elements, between 4 and 8 residues long. finally, we observed that a significant amount of short sequences tend to display strong structural ambiguity between alpha helix and extended conformations. when the sequence length increases, this so-called sequence plasticity is no longer observed, illustrating the context dependency of polypeptide structures.'};
Z = cell(size(X));
for m = 1:numel(X)
Y = bsxfun(@eq,X{m}(:),str);
for n = 2:size(Y,2)
Y(:,n) = Y(:,n) & cumsum(Y(:,n-1))>0;
end
Z{m} = find(any(diff([false(size(str));cumsum(Y)>0],1),2));
end
EDIT: improved code that takes into account repeated characters (see the comments):
m = 1;
str = 'communication';
X = {'computers memory unites collection demarcation'};
Y = bsxfun(@eq,X{m}(:),str);
for n = 2:size(Y,2)
Y(:,n) = Y(:,n) & [false;cumsum(Y(1:end-1,n-1))>0];
end
find(any(Y & cumsum(Y)<2, 2))
6 Comments
Stephen23
on 27 May 2015
Edited: Stephen23
on 27 May 2015
You are right, there was a bug in my original concept in that it did not take into account repeated characters. This version is more robust, and gives the output that you need:
m = 1;
str = 'communication';
X = {'computers memory unites collection demarcation'};
Y = bsxfun(@eq,X{m}(:),str);
for n = 2:size(Y,2)
Y(:,n) = Y(:,n) & [false;cumsum(Y(1:end-1,n-1))>0];
end
find(any(Y & cumsum(Y)<2, 2))
And it displays this in the command window:
ans =
1
2
3
11
18
19
20
25
39
43
44
45
46
More Answers (0)
See Also
Categories
Find more on Time Series in Help Center and File Exchange
Community Treasure Hunt
Find the treasures in MATLAB Central and discover how the community can help you!
Start Hunting!