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MIN1PIPE

version 1.0.1 (25.3 MB) by Jinghao Lu
A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.

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Updated 17 Jun 2020

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A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.

MIN1PIPE is a fully automatic, Matlab-based toolbox, solving the full range problems in 1-photon calcium imaging in one package: data enhancement → movement morrection → signal extraction. It requires minimal parameter-tuning and integrates the semi-auto options. Each inidividual module can also be easily adapted for the 2-photon imaging setting.

Cite As

Jinghao Lu (2020). MIN1PIPE (https://github.com/JinghaoLu/MIN1PIPE), GitHub. Retrieved .

Lu, Jinghao, et al. “MIN1PIPE: A Miniscope 1-Photon-Based Calcium Imaging Signal Extraction Pipeline.” Cell Reports, vol. 23, no. 12, Elsevier BV, June 2018, pp. 3673–84, doi:10.1016/j.celrep.2018.05.062.

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Updates

1.0.1

Full version

MATLAB Release Compatibility
Created with R2018a
Compatible with R2018a to R2019a
Platform Compatibility
Windows macOS Linux
Tags Add Tags

utilities/CNMF

utilities/RNN

utilities/elements

utilities/movement_correction

utilities/postprocess