# Do not plot the shape in the middle and polar transformation

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Alex Perrakis on 18 Nov 2021
Commented: Alex Perrakis on 18 Nov 2021
Hello Guys, i have the above seen plot and i would like not to plot the shape seen within the circle and the do a polar tranformation. So that that circle appears to be a line.
Alex Perrakis on 18 Nov 2021
and here is the 50

Adam Danz on 18 Nov 2021
Edited: Adam Danz on 18 Nov 2021
This demo uses a cleaned up version of your code and then does the following,
1. Computes center of noisy circle
2. Shifts noisy circle to (0,0)
3. Converts shifted image to polar coordinates
4. finds the spike in rho values (radii) based on thresholding
5. Removes the spike.
If you want a smooth circle, you could fit the final (x,y) values to a cirlce (see example) or just use the median rho values in polar coordinates.
% Your code cleaned up
newpicture=imsubtract(pic01,pic050);
%imshow(newpicture)
% level = graythresh(newpicture);
level = 0.1405;
newbinpic = imbinarize(newpicture,level);
%imshowpair(newpicture,newbinpic,'montage')
newbinpic2=bwpropfilt(newbinpic,'perimeter',1);
% imshowpair(newbinpic2,newpicture,'montage');
boundaries = bwboundaries(newbinpic2,'noholes');
% Plot raw (x,y) values
x = boundaries{1}(:,2);
y = boundaries{1}(:,1);
figure()
subplot(2,2,1)
plot(x,y, 'r-')
title('raw values')
axis equal tight
hold on
% Assuming (x,y) is a noisy circle, find center
cnt = [min(x)+range(x)/2, min(y)+range(y)/2];
xline(cnt(1))
yline(cnt(2))
% Shift to (0,0) and compute polar coordinates
[theta, rho] = cart2pol(x-cnt(1), y-cnt(2));
% Plot in polar coord
subplot(2,2,2)
polarplot(theta, rho)
title('Polar coord.')
% Define a reasonable threshold to isolate the spike in RHO values
% 90% of the median looks OK
subplot(2,2,3)
plot(rho)
threshold = median(rho)*.9;
yline(threshold, '-k', 'Threshold')
ylabel('rho'); xlabel('index')
title('rho values')
% Find start and end of peak
peakIdx = find(rho < threshold);
peakIdx(2:end-1) = [];
xline(peakIdx(1)) % plot start of peak
xline(peakIdx(2)) % plot end of peak
% Remove the peak
theta(peakIdx(1):peakIdx(2)) = []; % you can do the same with x
rho(peakIdx(1):peakIdx(2)) = []; % you can do the same with y
% Plot the circle without the interior object
subplot(2,2,4)
polarplot(theta,rho)
title('Inner removed')
Alex Perrakis on 18 Nov 2021
thanks bro you did me a solid.

R2021a

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