how to change the image from axial to sagittal

2 views (last 30 days)
Dear All
I have Image as you can download from link here (https://drive.google.com/file/d/1UWWDY07p4QJKOhkTj-CSe4tZcU8cjmeV/view?usp=sharing).
But when I evelaute my coding, the image show as axial view. Anyone know how to change it into sagittal view?
clc
clear all
close all
sz = [128 128 128];
fname = 'jaszak166_dew_w2.h00_it4.img';
fid = fopen(fname);
data = fread(fid,'*float'); % assuming uint
fclose(fid);
% this is blindly devectorized
% may still be transposed, but i can't tell due to symmetry
% note that data is binarized on a [0 1000] scale in uint16
% so if viewing in a denormalized manner, it'll just appear black
% normalize or rescale it as needed
data = reshape(data,sz);
imtool3D(data)
  2 Comments
Vinay
Vinay on 11 Oct 2024
Hi @mohd akmal masud, the drive link is not accessible. Could you please share the image in the comments section instead?
mohd akmal masud
mohd akmal masud on 11 Oct 2024
Dear @Vinay, here you go https://drive.google.com/file/d/10EUsydCVzIYAaQMXOvzzg4K9L6nw6SLc/view?usp=sharing

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Accepted Answer

Matt J
Matt J on 11 Oct 2024
imtool3D() is not a native Matlab function, but I imagine if you permute your data permute(data,[3,1,2]) so that its slices are sagittally aligned, it will display the way you wish.
  6 Comments
mohd akmal masud
mohd akmal masud on 11 Oct 2024
Dear @Matt J
the images can get https://drive.google.com/file/d/10EUsydCVzIYAaQMXOvzzg4K9L6nw6SLc/view?usp=sharing
Matt J
Matt J on 11 Oct 2024
Writing to dicom is a tricky thing, but also seems unnecessary for the purposes of your posted question. imtool3D doesn't need its input in DICOM form.

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