How do I stitch multiple images in a spiral order
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Hi I am trying to stitch images in a spiral order starting from the center moving outward.
I have anywhere from 16-100 microscope images that need to be stitched together to form a square. The microscope takes images in a spiral and are labeled in sequential order of how they are taken. The images are named like so, AS-PC-7173_200824160001_A01f00d0, AS-PC-7173_200824160001_A01f01d0, AS-PC-7173_200824160001_A01f02d0,... the bolded letters represent the image number so for example, a 4x4 montage image will have images in order from 00-015. I am currently using the imtile() function but I have to manually rename each image in the position the function stitches them which is right to left and top to bottom.
This is a representation of how the images are taken, 0 being the first image and 63 being the last. In order for my imtile() function to work I rename image 63 (AS-PC-7173_200824160001_A63f01d0 as 01, image 62 as 02, image 61 as 03, and so on.
The only code I have right now is as follows:
myFolder = '/Users/...';
fileFolder = fullfile(myFolder,'*.tif');
imds = imageDatastore(fileFolder);
stitched = imtile(imds);
imshow(stitched);
Is there a way to have matlab stitch images in an order of my choosing or even a way to rename my images in the order imtile() would stitch. (Rename them as 63, 63, 61, 60, 59, 58, 57, 56, 36, 35,...
Thanks for the help!
2 Comments
Image Analyst
on 27 Aug 2020
Just make up that array going out all the way to 100 (10-by-10), then it should be trivial. If you can't figure it out, give us code where you assign the 10-by-10 array and we'll do it.
Answers (1)
jonas
on 27 Aug 2020
Edited: jonas
on 27 Aug 2020
I would just put each image in a cell array, A(1)... A(n) based on their original name.
Then it's just a matter of indexing. Here I've made 10000 2x2 RGB images as an example, using spiral() to make the indices.
for i = 1:10000
A{i} = repmat(i/10000,2,2,3);
end
new_id = spiral(100);
A_new = A(new_id);
I = cell2mat(A_new);
imshow(I)
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