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As pointed out in Doxygen comments in code generated with Simulink Embedded Coder - MATLAB Answers - MATLAB Central (mathworks.com), it would be nice that Embedded Coder has an option to generate Doxygen-style comments for signals of buses, i.e.:
/** @brief <Signal desciption here> **/
This would allow static analysis tools to parse the comments. Please add that feature!
As far as I know, starting from MATLAB R2024b, the documentation is defaulted to be accessed online. However, the problem is that every time I open the official online documentation through my browser, it defaults or forcibly redirects to the documentation hosted site for my current geographic location, often with multiple pop-up reminders, which is very annoying!
Suggestion: Could there be an option to set preferences linked to my personal account so that the documentation defaults to my chosen language preference without having to deal with “forced reminders” or “forced redirection” based on my geographic location? I prefer reading the English documentation, but the website automatically redirects me to the Chinese documentation due to my geolocation, which is quite frustrating!
----------------2024.12.13 update-----------------
Although the above issue was resolved by technical support, subsequent redirects are still causing severe delays...
MATLAB online documentation redirection is very time-consuming - MATLAB Answers - MATLAB Central
In the past two years, MATHWORKS has updated the image viewer and audio viewer, giving them a more modern interface with features like play, pause, fast forward, and some interactive tools that are more commonly found in typical third-party players. However, the video player has not seen any updates. For instance, the Video Viewer or vision.VideoPlayer could benefit from a more modern player interface. Perhaps I haven't found a suitable built-in player yet. It would be great if there were support for custom image processing and audio processing algorithms that could be played in a more modern interface in real time.
Additionally, I found it quite challenging to develop a modern video player from scratch in App Designer.（If there's a video component for that that would be great）
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BTW，the following picture shows the built-in function uihtml function showing a more modern playback interface with controls for play, pause and so on. But can not add real-time image processing algorithms within it.
Chris Hooper
Chris Hooper
Last activity on 29 Aug 2024

uniqueN function would be useful

isequaln exists to return true when NaN==NaN.
unique treats NaN==NaN as false (as it should) requiring NaN to be replaced if NaN is not considered unique in a particular application. In my application, I am checking uniqueness of table rows using [table_unique,index_unique]=unique(table,"rows","sorted") and would prefer to keep NaN as NaN or missing in table_unique without the overhead of replacing it with a dummy value then replacing it again. Dummy values also have the risk of matching existing values in the table, requiring first finding a dummy value that is not in the table.
uniquen (similar to isequaln) would be more eloquent.
Please point out if I am missing something!
Daniel Bending
Daniel Bending
Last activity on 20 Aug 2024

Fraction of unexplained variance:

Hi All,
I'm currently verifying a global sensitivity analysis done in SimBiology and I'm a touch confused. This analysis was run with every parameter and compartment volume in the model. To my understanding the fraction of unexplained variance is 1 - the sum of the first order variances, therefore if the model dynamics are dominated by interparameter effects you might see a higher fraction of unexplained variance. In this analysis however, as the attached figure shows (with input at t=20 minutes), the most sensitive four parameters seem to sum, in first order sensitivities to roughly one at each time point and the total order sensitivies appear nearly identical. So how is the fraction of unexplained variance near one?
Thank you for your help!
Something that had bothered me ever since I became an FEA analyst (2012) was the apparent inability of the "camera" in Matlab's 3D plot to function like the "cameras" in CAD/CAE packages.
For instance, load the ForearmLink.stl model that ships with the PDE Toolbox in Matlab and ParaView and try rotating the model.
clear
close all
gm = importGeometry( "ForearmLink.stl" );
pdegplot(gm)
To provide talking points, here's a YouTube video I recorded.
Things to observe:
  1. Note that I cant seem to rotate continuously around the x-axis. It appears to only support rotations from [0, 360] as opposed to [-inf, inf]. So, for example, if I'm looking in the Y+ direction and rotate around X so that I'm looking at the Z- direction, and then want to look in the Y- direction, I can't simply keep rotating around the X axis... instead have to rotate 180 degrees around the Z axis and then around the X axis. I'm not aware of any data visualization applications (e.g., ParaView, VisIt, EnSight) or CAD/CAE tools with such an interaction.
  2. Note that at the 50 second mark, I set a view in ParaView: looking in the [X-, Y-, Z-] direction with Y+ up. Try as I might in Matlab, I'm unable to achieve that same view perspective.
Today I discovered that if one turns on the Camera Toolbar from the View menubar, then clicks the Orbit Camera icon, then the No Principal Axis icon:
That then it acts in the manner I've long desired. Oh, and also, for the interested, it is programmatically available: https://www.mathworks.com/help/matlab/ref/cameratoolbar.html
I might humbly propose this mode either be made more discoverable, similar to the little interaction widgets that pop up in figures:
Or maybe use the middle-mouse button to temporarily use this mode (a mouse setting in, e.g., Abaqus/CAE).
Honzik
Honzik
Last activity on 18 Jul 2024

Matlab Custom Font

I've noticed is that the highly rated fonts for coding (e.g. Fira Code, Inconsolata, etc.) seem to overlook one issue that is key for coding in Matlab. While these fonts make 0 and O, as well as the 1 and l easily distinguishable, the brackets are not. Quite often the curly bracket looks similar to the curved bracket, which can lead to mistakes when coding or reviewing code.
So I was thinking: Could Mathworks put together a team to review good programming fonts, and come up with their own custom font designed specifically and optimized for Matlab syntax?
An option for 10th degree polynomials but no weighted linear least squares. Seriously? Jesse
Hi to everyone!
To simplify the explanation and the problem, I simulated the kinetics of an irreversible first-order reaction, A -> B. I implemented it in two independent compartments, R and P. I simulated the effect of a dilution in R by doubling at t= 0,1 the R volume. I programmed in P that, at t = 0.1, the instantaneous concentration of A and B would be reduced by half. I am sending an attach with the implementation of these simulations in the Simbiology interface.
When the simulations of the two compartments are plotted, it can be seen that the responses are not equal. That is, from t = 0.1 s, the reaction follow an exponential function in R with half of the initial amplitude and half of the initial value of k1. That is, the relaxation time is doubled. Meanwhile, in P, from t = 0.1, the reaction follows exponential kinetics with half the amplitude value but maintaining the initial value of k = 10. Without a doubt, the correct simulation is the latter (compartment P) where only the effect is observed in the amplitude and not in the relaxation time. Could you tell me what the error is that makes these kinetics that should be equal not be?
Thank you in advance!
Luis B.
Hi All,
I've been producing a QSP model of glucose homeostasis for a while now for my PhD project, recently I've been able to expand it to larger time series, i.e. 2 days of data rather than a singular injection or a singular meal. My problem is as follows: If I put 75g of glucose into my stomach glucose species any later than (exactly) 8.5 hours I get an integration tolerance error. Curiosly, I can put 25g of glucose in at any time up to 15.9 hours, then any later an error. I have disabled all connections to my glucose absorption chain, i.e. stomach -> duodenum -> jenenum -> ileum -> removal, to isolate the cause of this. I had initially thought it may be because I mechanistically model liver glycogen and that does deplete over time, but I've tested enough to show that that does nothing. My next test is to isolate the glucose absorption chain into a seperate model and see if the issue persists but I'm completely baffled!
These are the equations, to my eye there's no reason why there would be such a sharp glucose quantity/time dependence, they all begin at a value of 0:
d(Gs)/dt = -(kw*(1-Gd^14/(Igd^14+Gd^14))*Gs) #Stomach glucose
d(Gd)/dt = (kw*(1-Gd^14/(Igd^14+Gd^14))*Gs) - (kdj*Gd) #Duodenal Glucose
d(Gj)/dt = (kdj*Gd) - (kji*Gj) #Jejunal Glucose
d(Gi)/dt = (kji*Gj) - (kic*Gi) #Ileal Glucose
(The sigmoidicity of gastric emptying slowing term (^14) was parameterised off of paracetamol absorption data and appears to be correct!)
Thank you for your help, best regards,
Dan
Pre-Edit: I changed the run time to 30 hours and now I can't use the 75g input any later than 7.9 hours not 8.5 hours anymore!
Edit: This is how it appears at all times prior to it failing for 75g:
While searching the internet for some books on ordinary differential equations, I came across a link that I believe is very useful for all math students and not only. If you are interested in ODEs, it's worth taking the time to study it.
A First Look at Ordinary Differential Equations by Timothy S. Judson is an excellent resource for anyone looking to understand ODEs better. Here's a brief overview of the main topics covered:
  1. Introduction to ODEs: Basic concepts, definitions, and initial differential equations.
  2. Methods of Solution:
  • Separable equations
  • First-order linear equations
  • Exact equations
  • Transcendental functions
  1. Applications of ODEs: Practical examples and applications in various scientific fields.
  2. Systems of ODEs: Analysis and solutions of systems of differential equations.
  3. Series and Numerical Methods: Use of series and numerical methods for solving ODEs.
This book provides a clear and comprehensive introduction to ODEs, making it suitable for students and new researchers in mathematics. If you're interested, you can explore the book in more detail here: A First Look at Ordinary Differential Equations.
📚 New Book Announcement: "Image Processing Recipes in MATLAB" 📚
I am delighted to share the release of my latest book, "Image Processing Recipes in MATLAB," co-authored by my dear friend and colleague Gustavo Benvenutti Borba.
This 'cookbook' contains 30 practical recipes for image processing, ranging from foundational techniques to recently published algorithms. It serves as a concise and readable reference for quickly and efficiently deploying image processing pipelines in MATLAB.
Gustavo and I are immensely grateful to the MathWorks Book Program for their support. We also want to thank Randi Slack and her fantastic team at CRC Press for their patience, expertise, and professionalism throughout the process.
___________
A high school student called for help with this physics problem:
  • Car A moves with constant velocity v.
  • Car B starts to move when Car A passes through the point P.
  • Car B undergoes...
  • uniform acc. motion from P to Q.
  • uniform velocity motion from Q to R.
  • uniform acc. motion from R to S.
  • Car A and B pass through the point R simultaneously.
  • Car A and B arrive at the point S simultaneously.
Q1. When car A passes the point Q, which is moving faster?
Q2. Solve the time duration for car B to move from P to Q using L and v.
Q3. Magnitude of acc. of car B from P to Q, and from R to S: which is bigger?
Well, it can be solved with a series of tedious equations. But... how about this?
Code below:
%% get images and prepare stuffs
figure(WindowStyle="docked"),
ax1 = subplot(2,1,1);
hold on, box on
ax1.XTick = [];
ax1.YTick = [];
A = plot(0, 1, 'ro', MarkerSize=10, MarkerFaceColor='r');
B = plot(0, 0, 'bo', MarkerSize=10, MarkerFaceColor='b');
[carA, ~, alphaA] = imread('https://cdn.pixabay.com/photo/2013/07/12/11/58/car-145008_960_720.png');
[carB, ~, alphaB] = imread('https://cdn.pixabay.com/photo/2014/04/03/10/54/car-311712_960_720.png');
carA = imrotate(imresize(carA, 0.1), -90);
carB = imrotate(imresize(carB, 0.1), 180);
alphaA = imrotate(imresize(alphaA, 0.1), -90);
alphaB = imrotate(imresize(alphaB, 0.1), 180);
carA = imagesc(carA, AlphaData=alphaA, XData=[-0.1, 0.1], YData=[0.9, 1.1]);
carB = imagesc(carB, AlphaData=alphaB, XData=[-0.1, 0.1], YData=[-0.1, 0.1]);
txtA = text(0, 0.85, 'A', FontSize=12);
txtB = text(0, 0.17, 'B', FontSize=12);
yline(1, 'r--')
yline(0, 'b--')
xline(1, 'k--')
xline(2, 'k--')
text(1, -0.2, 'Q', FontSize=20, HorizontalAlignment='center')
text(2, -0.2, 'R', FontSize=20, HorizontalAlignment='center')
% legend('A', 'B') % this make the animation slow. why?
xlim([0, 3])
ylim([-.3, 1.3])
%% axes2: plots velocity graph
ax2 = subplot(2,1,2);
box on, hold on
xlabel('t'), ylabel('v')
vA = plot(0, 1, 'r.-');
vB = plot(0, 0, 'b.-');
xline(1, 'k--')
xline(2, 'k--')
xlim([0, 3])
ylim([-.3, 1.8])
p1 = patch([0, 0, 0, 0], [0, 1, 1, 0], [248, 209, 188]/255, ...
EdgeColor = 'none', ...
FaceAlpha = 0.3);
%% solution
v = 1; % car A moves with constant speed.
L = 1; % distances of P-Q, Q-R, R-S
% acc. of car B for three intervals
a(1) = 9*v^2/8/L;
a(2) = 0;
a(3) = -1;
t_BatQ = sqrt(2*L/a(1)); % time when car B arrives at Q
v_B2 = a(1) * t_BatQ; % speed of car B between Q-R
%% patches for velocity graph
p2 = patch([t_BatQ, t_BatQ, t_BatQ, t_BatQ], [1, 1, v_B2, v_B2], ...
[248, 209, 188]/255, ...
EdgeColor = 'none', ...
FaceAlpha = 0.3);
p3 = patch([2, 2, 2, 2], [1, v_B2, v_B2, 1], [194, 234, 179]/255, ...
EdgeColor = 'none', ...
FaceAlpha = 0.3);
%% animation
tt = linspace(0, 3, 2000);
for t = tt
A.XData = v * t;
vA.XData = [vA.XData, t];
vA.YData = [vA.YData, 1];
if t < t_BatQ
B.XData = 1/2 * a(1) * t^2;
vB.XData = [vB.XData, t];
vB.YData = [vB.YData, a(1) * t];
p1.XData = [0, t, t, 0];
p1.YData = [0, vB.YData(end), 1, 1];
elseif t >= t_BatQ && t < 2
B.XData = L + (t - t_BatQ) * v_B2;
vB.XData = [vB.XData, t];
vB.YData = [vB.YData, v_B2];
p2.XData = [t_BatQ, t, t, t_BatQ];
p2.YData = [1, 1, vB.YData(end), vB.YData(end)];
else
B.XData = 2*L + v_B2 * (t - 2) + 1/2 * a(3) * (t-2)^2;
vB.XData = [vB.XData, t];
vB.YData = [vB.YData, v_B2 + a(3) * (t - 2)];
p3.XData = [2, t, t, 2];
p3.YData = [1, 1, vB.YData(end), v_B2];
end
txtA.Position(1) = A.XData(end);
txtB.Position(1) = B.XData(end);
carA.XData = A.XData(end) + [-.1, .1];
carB.XData = B.XData(end) + [-.1, .1];
drawnow
end
Updating some of my educational Livescripts to 2024a, really love the new "define a function anywhere" feature, and have a "new" idea for improving Livescripts -- support "hidden" code blocks similar to the Jupyter Notebooks functionality.
For example, I often create "complicated" plots with a bunch of ancillary items and I don't want this code exposed to the reader by default, as it might confuse the reader. For example, consider a Livescript that might read like this:
-----
Noting the similar structure of these two mappings, let's now write a function that simply maps from some domain to some other domain using change of variable.
function x = ChangeOfVariable( x, from_domain, to_domain )
x = x - from_domain(1);
x = x * ( ( to_domain(2) - to_domain(1) ) / ( from_domain(2) - from_domain(1) ) );
x = x + to_domain(1);
end
Let's see this function in action
% HIDE CELL
clear
close all
from_domain = [-1, 1];
to_domain = [2, 7];
from_values = [-1, -0.5, 0, 0.5, 1];
to_values = ChangeOfVariable( from_values, from_domain, to_domain )
to_values = 1×5
2.0000 3.2500 4.5000 5.7500 7.0000
We can plot the values of from_values and to_values, showing how they're connected to each other:
% HIDE CELL
figure
hold on
for n = 1 : 5
plot( [from_values(n) to_values(n)], [1 0], Color="k", LineWidth=1 )
end
ax = gca;
ax.YTick = [];
ax.XLim = [ min( [from_domain, to_domain] ) - 1, max( [from_domain, to_domain] ) + 1 ];
ax.YLim = [-0.5, 1.5];
ax.XGrid = "on";
scatter( from_values, ones( 5, 1 ), Marker="s", MarkerFaceColor="flat", MarkerEdgeColor="k", SizeData=120, LineWidth=1, SeriesIndex=1 )
text( mean( from_domain ), 1.25, "$\xi$", Interpreter="latex", HorizontalAlignment="center", VerticalAlignment="middle" )
scatter( to_values, zeros( 5, 1 ), Marker="o", MarkerFaceColor="flat", MarkerEdgeColor="k", SizeData=120, LineWidth=1, SeriesIndex=2 )
text( mean( to_domain ), -0.25, "$x$", Interpreter="latex", HorizontalAlignment="center", VerticalAlignment="middle" )
scaled_arrow( ax, [mean( [from_domain(1), to_domain(1) ] ) - 1, 0.5], ( 1 - 0 ) / ( from_domain(1) - to_domain(1) ), 1 )
scaled_arrow( ax, [mean( [from_domain(end), to_domain(end)] ) + 1, 0.5], ( 1 - 0 ) / ( from_domain(end) - to_domain(end) ), -1 )
text( mean( [from_domain(1), to_domain(1) ] ) - 1.5, 0.5, "$x(\xi)$", Interpreter="latex", HorizontalAlignment="center", VerticalAlignment="middle" )
text( mean( [from_domain(end), to_domain(end)] ) + 1.5, 0.5, "$\xi(x)$", Interpreter="latex", HorizontalAlignment="center", VerticalAlignment="middle" )
-----
Where scaled_arrow is some utility function I've defined elsewhere... See how a majority of the code is simply "drivel" to create the plot, clear and close? I'd like to be able to hide those cells so that it would look more like this:
-----
Noting the similar structure of these two mappings, let's now write a function that simply maps from some domain to some other domain using change of variable.
function x = ChangeOfVariable( x, from_domain, to_domain )
x = x - from_domain(1);
x = x * ( ( to_domain(2) - to_domain(1) ) / ( from_domain(2) - from_domain(1) ) );
x = x + to_domain(1);
end
Let's see this function in action
▶ Show code cell
from_domain = [-1, 1];
to_domain = [2, 7];
from_values = [-1, -0.5, 0, 0.5, 1];
to_values = ChangeOfVariable( from_values, from_domain, to_domain )
to_values = 1×5
2.0000 3.2500 4.5000 5.7500 7.0000
We can plot the values of from_values and to_values, showing how they're connected to each other:
▶ Show code cell
-----
Thoughts?
I recently had issues with code folding seeming to disappear and it turns out that I had unknowingly disabled the "show code folding margin" option by accident. Despite using MATLAB for several years, I had no idea this was an option, especially since there seemed to be no references to it in the code folding part of the "Preferences" menu.
It would be great if in the future, there was a warning that told you about this when you try enable/disable folding in the Preferences.
I am using 2023b by the way.
In the MATLAB editor, when clicking on a variable name, all the other instances of the variable name will be highlighted.
But this does not work for structure fields, which is a pity. Such feature would be quite often useful for me.
I show an illustration below, and compare it with Visual Studio Code that does it. ;-)
I am using MATLAB R2023a, sorry if it has been added to newer versions, but I didn't see it in the release notes.
Join us for a hands-on workshop focussing on Global Sensitivity Analysis (GSA) for QSP using SimBiology. This complimentary session aims to give you theoretical background and hands-on experience with GSA methods.
🗓️ Event Details: June 25, 1-5pm CEST @PAGE 2024, Rome
🔖 Registration: Free, but space is limited. Early registration is recommended to ensure your place in this workshop.
For more details and to register, please visit https://www.mathworks.com/company/events/seminars/global-sensitivity-analysis-with-simbiology-4361208.html
In short: support varying color in at least the plot, plot3, fplot, and fplot3 functions.
This has been a thing that's come up quite a few times, and includes questions/requests by users, workarounds by the community, and workarounds presented by MathWorks -- examples of each below. It's a feature that exists in Python's Matplotlib library and Sympy. Anyways, given that there are myriads of workarounds, it appears to be one of the most common requests for Matlab plots (Matlab's plotting is, IMO, one of the best features of the product), the request precedes the 21st century, and competitive tools provide the functionality, it would seem to me that this might be the next great feature for Matlab plotting.
I'm curious to get the rest of the community's thoughts... what's everyone else think about this?
---
User questions/requests
User-provided workarounds
MathWorks-provided workarounds
Hi All,
I'm trying to produce some nice figures from the graphical user interface and have a set of local sensitivity analyses that I'd like to combine.
I have two inputs that vary the sensitivies of my system and would like to plot them on top of each other like:
Is there either a way to do this natively in simbiology (when you try and use 'keep results from each run' it plots them both as a time series) or to export the sensitivity data to the normal matlab programatic UI where I can combine them by hand?
Thank you for your help!
I would like to propose the creation of MATLAB EduHub, a dedicated channel within the MathWorks community where educators, students, and professionals can share and access a wealth of educational material that utilizes MATLAB. This platform would act as a central repository for articles, teaching notes, and interactive learning modules that integrate MATLAB into the teaching and learning of various scientific fields.
Key Features:
1. Resource Sharing: Users will be able to upload and share their own educational materials, such as articles, tutorials, code snippets, and datasets.
2. Categorization and Search: Materials can be categorized for easy searching by subject area, difficulty level, and MATLAB version..
3. Community Engagement: Features for comments, ratings, and discussions to encourage community interaction.
4. Support for Educators: Special sections for educators to share teaching materials and track engagement.
Benefits:
- Enhanced Educational Experience: The platform will enrich the learning experience through access to quality materials.
- Collaboration and Networking: It will promote collaboration and networking within the MATLAB community.
- Accessibility of Resources: It will make educational materials available to a wider audience.
By establishing MATLAB EduHub, I propose a space where knowledge and experience can be freely shared, enhancing the educational process and the MATLAB community as a whole.