Exploring Protein-DNA Binding Sites from Paired-End ChIP-Seq Data

Version 1.0.0.1 (284 KB) by Richard Willey
MATLAB code for the "Exploring Protein-DNA Binding Sites from Paired-End ChIP-Seq Data" webinar.
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Updated 1 Sep 2016

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This file shows how to use MATLAB and Bioinformatics Toolbox for a typical ChIP-Seq workflow. Key topics include:
Peak detection using wavelet denoising
Working with paired end short reads
Generating coverage plots

Cite As

Richard Willey (2024). Exploring Protein-DNA Binding Sites from Paired-End ChIP-Seq Data (https://www.mathworks.com/matlabcentral/fileexchange/31369-exploring-protein-dna-binding-sites-from-paired-end-chip-seq-data), MATLAB Central File Exchange. Retrieved .

MATLAB Release Compatibility
Created with R2011a
Compatible with any release
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Version Published Release Notes
1.0.0.1

Updated license
1.0.0.0