GEO Platform Annotation Table Reader
This function reads and parses platform annotation table (*.annot) for NCBI Gene Expression Omnibus(GEO). Platform annotation table contain information about platforms.
Input:
filename: filename of the *.annot file
Output:
annotation: platform annotation info platform_table: platform table
Example:
1) obtain a *.annot file
e.g. from ftp://ftp.ncbi.nlm.nih.gov/geo/platforms/GPL2nnn/GPL2883/annot/GPL2883.annot.gz
unzip the file, you will get: GPL2883.annot
2) put the function and the annot file in your working directry, or addpath
3) run function
[annotation, platform_table]=read_annot_file('GPL2883.annot');
Cite As
Sisi Ma (2024). GEO Platform Annotation Table Reader (https://www.mathworks.com/matlabcentral/fileexchange/43153-geo-platform-annotation-table-reader), MATLAB Central File Exchange. Retrieved .
MATLAB Release Compatibility
Platform Compatibility
Windows macOS LinuxCategories
Tags
Community Treasure Hunt
Find the treasures in MATLAB Central and discover how the community can help you!
Start Hunting!Discover Live Editor
Create scripts with code, output, and formatted text in a single executable document.
Version | Published | Release Notes | |
---|---|---|---|
1.0.0.0 |