scGEAToolbox (single-cell Gene Expression Analysis Toolbox)

Version 24.7.7 (254 MB) by James Cai
Single-cell Gene Expression Analysis Toolbox
5.0
(2)
1.2K Downloads
Updated 21 Nov 2024
View License on GitHub

Cite As

Cai JJ. scGEAToolbox: a Matlab toolbox for single-cell RNA sequencing data analysis. Bioinformatics. 2019 Nov 7:btz830. doi: 10.1093/bioinformatics/btz830. PMID: 31697351.

MATLAB Release Compatibility
Created with R2024b
Compatible with any release
Platform Compatibility
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+gui

+gui/@SplashScreen

+gui/private

+pkg

+pkg/private

+run

+run/external/R_Seurat

+run/external/R_SeuratSaveRds

+run/external/R_clustermole

+run/external/R_scCancer

+run/external/R_scplotter

+run/external/ml_CCPE

+run/external/ml_CSN_transform

+run/external/ml_ComBat

+run/external/ml_GENIE3

+run/external/ml_GENIE3/RT

+run/external/ml_HCP

+run/external/ml_MAGIC

+run/external/ml_McImpute/+mcimpute

+run/external/ml_PHATE

+run/external/ml_SC3/ClusterPack

+run/external/ml_SIMLR

+run/external/ml_SIMLR/src

+run/external/ml_SNNDPC

+run/external/ml_SinNLRR

+run/external/ml_SoptSC

+run/external/ml_SoptSC/NNDSVD

+run/external/ml_SoptSC/symnmf2

+run/external/ml_SoptSC/vinlinplot

+run/external/ml_Specter

+run/external/ml_Specter/LSC

+run/external/ml_Specter/dimred

+run/external/ml_Specter/utils

+run/external/ml_TSEE

+run/external/ml_UMAP44

+run/external/ml_UMAP44/util

+run/external/ml_beyondcell

+run/external/ml_cbrewer

+run/external/ml_scGeneFit

+run/external/ml_scGeneFit/source

+run/external/ml_scGeneFit/source/classification_metrics

+run/external/py_SERGIO

+run/external/py_harmonypy

+run/external/py_writeh5ad

+run/external/web_STRING/stringdb

+run/private

+run/thirdparty/MPPC

+run/thirdparty/alona_panglaodb

+run/thirdparty/alona_panglaodb/msigdb_c8

+run/thirdparty/alona_subtypes

+run/thirdparty/k-NN-code

+run/thirdparty/locfit/Source

+run/thirdparty/locfit/m

+ten

+ten/+xct

@SingleCellExperiment

private

resources/HPA_Single_Cell_Type_Atlas

tensor_toolbox

tensor_toolbox/@ktensor

tensor_toolbox/@tenmat

tensor_toolbox/@tensor

tensor_toolbox/@ttensor

tensor_toolbox/test

doc

Versions that use the GitHub default branch cannot be downloaded

Version Published Release Notes
24.7.7

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.7.7
24.7.6

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.7.6
24.7.5

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.7.5
24.7.3

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.7.3
24.7.2

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.7.2
24.7.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.7.1
24.7.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.7.0
24.6.9

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.6.9
24.6.8

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.6.8
24.6.7

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.6.7
24.6.6

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.6.6
24.6.5

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.6.5
24.6.4

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.6.4
24.6.3

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.6.3
24.6.2

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.6.2
24.6.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.6.1
24.6.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.6.0
24.5.9

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.5.9
24.5.8

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.5.8
24.5.7

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.5.7
24.5.6

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.5.6
24.5.5

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.5.5
24.5.4

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.5.4
24.5.3

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.5.3
24.5.2

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.5.2
24.5.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.5.1
24.5.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.5.0
24.4.9

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.4.9
24.4.8

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.4.8
24.4.7

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.4.7
24.4.5

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.4.5
24.4.4

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.4.4
24.4.3

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.4.3
24.4.2

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.4.2
24.4.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.4.0
24.3.9

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.9
24.3.8

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.8
24.3.7

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.7
24.3.6

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.6
24.3.5

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.5
24.3.4

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.4
24.3.3

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.3
24.3.2

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.2
24.3.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.1
24.3.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.0
24.2.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.2.0
24.1.3

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.1.3
24.1.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.1.1
24.1.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.1.0
23.9.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.9.0
23.8.0

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23.7.0

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23.6.5.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.6.5
23.6.0.0

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23.5.0.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.5.0
23.4.7.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.7
23.4.6

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.6
23.4.5.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.5
See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.5
23.4.4.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.4
23.4.2.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.2
23.4.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.1
See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.1
See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.1
23.3.2.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.3.2
23.3.1.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.3.1
23.3.0.0

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23.2.6.0

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23.2.4.0

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23.2.3.0

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23.2.1.0

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23.1.4.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.1.4
23.1.3.0

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23.1.2.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.1.2
23.1.1.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.1.1
22.9.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.9.1
22.7.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.7.1
22.6.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.6.1
22.4.11

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.4.11
22.4.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.4.1
22.3.6

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.3.6
22.3.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.3.1
22.2.21

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.2.21
22.2.9

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.2.9
22.1.31

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.1.31
22.1.30

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.1.30
22.1.29

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.1.29
22.1.23

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.1.23
22.1.19

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.1.19
22.1.13

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.1.13
21.12.28

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.12.28
21.12.13

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.12.13
21.12.10

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.12.10
21.12.8

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21.12.04

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21.11.19

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21.11.18

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.11.18
21.11.13

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.11.13
21.11.6

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.11.6
21.10.17

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.10.17
21.9.30

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.9.30
21.9.23

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.9.23
21.9.7

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.9.7
21.9.3

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21.9.2

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.9.2
21.8.29

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.8.29
21.8.24

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.8.24
21.8.9

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.8.9
21.8.4

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.8.4
21.8.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.8.1
21.7.29.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.7.29
21.7.26

new doc
21.7.14

new title
21.7.13

indicates the folder to be added when installing add-on
21.1.16

sc_scatter
21.1.15

SC_SCATTER(X, genelist)
21.1.14

Try new function: SC_SCATTER.m
Read documentation URL: https://scgeatoolbox.readthedocs.io/
20.8.2

add sc_celltypeexplorer_auto
20.7.5

cell marker gene identification function added.

1.0.0

To view or report issues in this GitHub add-on, visit the GitHub Repository.
To view or report issues in this GitHub add-on, visit the GitHub Repository.