144 results

Matlab code for interacting with the Open Ephys GUI.

abfload imports data in the Axon abf format (three different recording modes).

a version of abfload which is capable of reading abf 2.0 files

Calcium Data Extraction and Analysis

Complete Matlab pipeline for large scale calcium imaging data analysis

This is a tutorial for key data analysis steps used by neuroscientists - filtering, spike extraction, PCA, clustering, and spectral analysis

MATLAB toolbox for spike-train community detection

Plotting Routine to display neural spike trains

Set of functions for the basic analysis of spike data from neurophysiological experiments

Anakyze spike trains exported from multi-electrode arrays

MClust is a Matlab-based spike sorting toolbox for the separation of putative cells from multi-site neurophysiological recordings. It is pa

Obtains the current source density from local field potential data recorded from a linear electrode array

A spike raster plot from spike time stamps with optional trial and group data.

Read a TIFF stack as a memory-mapped tensor. Handles a large range of internal TIFF formats.

Fast, complete two-photon pipeline

A Matlab interface for reading and writing NWB files.

Scientific workflow management framework built on top of a relational database.

Fast and accurate spike sorting toolbox

This video-based course introduces learners to the power of MATLAB in different areas of neuroscience. Each module covers a different topic.

Read files generated by the Intan Technologies GUI for recording multichannel data.

CIAtah is a software package for calcium imaging analysis of one- and two-photon imaging datasets. https://github.com/bahanonu/ciatah

A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.

Matlab class to import HEKA Patchmaster files

A MEX function to read a PLX data file (Plexon, Inc.).

Automated manual curation and cell classification of spike-sorted electrophysiology data in MATLAB. Fine-tuned for kilosorted Neuropixels da

Kernel density estimation with bandwidths locally adapted to data.

Matlab codes for Diffusion MRI CSA-ODF computation, Hough tractography, and connectomic analysis.

Toolbox for batch analysis of postsynaptic current from neuronal recording

Utilities for managing Neuropixel SpikeGLX datasets, Kilosort2 sorting, waveform extraction and other tools

Characterize transient calcium signals

AxonSeg is a GUI that performs axon and myelin segmentation on histology images.

UltraMegaSort2000 - spike sorting and quality metrics of extracellular spike data

Calculates AP amplitude and timing, half-widths, threshold voltage, and frequency of firing

An application for acquiring neurophysiology data in Matlab

Required analysis codes for the joint analysis which we have introduced in Kapucu et al. (2015).

Detect spike threshold in membrane potential using phase space V versus dV/dt.

Import and Plot WinWCP Patch Clamp Electrophysiology Files into MATLAB

Complementary files to the book "Braiding technology for textiles"

Spike sorting program for extracellular recordings. Version 1.4

Algorithm from Fraser and Schwartz, "Recording from the same neurons chronically in motor cortex"

SincResample resamples signals to arbitrary lengths/frequencies and/or timeshifts them

Computes the peri-stimulus time histogram for neural spike times

Recognize 3D structures in volumetric images

EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time series

Matlab-based spike sorter for NEV files

Repository for experiments with BackyardBrains Hardware

A deep learning-enabled cell fluorescence measurement tool

Signal Processing Toolbox for Calcium Imaging Data

Accelerating speech prosthesis development with Simulink-based real-time neural decoding and audio synthesis

Frameworks for live cell imaging and stainings based on automatic detection of synapsis in a watershed based algorithm

Spike extraction from calcium signals (Deneux et al., 2016)

Performs offline series resistance correction/compensation of recorded currents

Graphical user interface to extract calcium transients from imaging experiments. Get raster of neuronal activity from a raw tiff file.

Script to analyse axonal aggregates based on fluorescence variation. Use together with script baseline analysis.

Automated analysis of spike count frequency, io curves and AP properties from WinWCP files.

remove spikes from signals

A behavioural model for Analogue Front End for developing neural spike sorting systems

Real time channel streaming with the CED's Power1401 device.

Spike Detection

Analyze neural spike train and continuous time data using point process methods